RnoEX6038256 @ rn6
Exon Skipping
Gene
ENSRNOG00000018047 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:RGD Symbol;Acc:621122]
Coordinates
chr8:128613726-128616926:-
Coord C1 exon
chr8:128616846-128616926
Coord A exon
chr8:128616194-128616397
Coord C2 exon
chr8:128613726-128613812
Length
204 bp
Sequences
Splice sites
3' ss Seq
GCTCCTCCCTGTCCCTGCAGAAC
3' ss Score
12.37
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTACAAGAGAACTCGCCAGCCCAGCAGGCGGGCCTGGAGCCCTACTTTGACTTCATCATCACCATCGGGCACTCAAGGCTG
Seq A exon
AACAAGGAGAATGACACGCTGAAGGCACTGCTGAAGGCTAATGTGGAGAAGCCGGTGAAGCTGGAGGTGTTCAACATGAAGACCATGAGGGTGCGAGAGGTGGAGGTGGTGCCCAGCAACATGTGGGGCGGCCAGGGCCTGCTGGGAGCTAGCGTGCGCTTCTGCAGCTTCCGCAGGGCCAGCGAGCACGTGTGGCATGTGCTG
Seq C2 exon
GATGTGGAGCCCTCTTCACCCGCTGCCTTGGCCGGCCTGCGCCCTTACACAGACTACATTGTTGGCTCTGACCAGATCCTCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018047-'6-3,'6-2,9-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF044959=GRASP55_65=PU(34.3=69.1)
C2:
PF044959=GRASP55_65=FE(20.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAAGAGAACTCGCCAGCC
R:
CCTGGAGGATCTGGTCAGAGC
Band lengths:
166-370
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]