BtaEX6093507 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000047135 | GORASP1
Description
Bos taurus golgi reassembly stacking protein 1, 65kDa (GORASP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046518]
Coordinates
chr22:12474052-12476585:-
Coord C1 exon
chr22:12476505-12476585
Coord A exon
chr22:12475645-12475848
Coord C2 exon
chr22:12474052-12474138
Length
204 bp
Sequences
Splice sites
3' ss Seq
CAGCCCTGCTGCCCTTGCAGAAC
3' ss Score
8.24
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTGCAGGAGAACTCCCCCGCCCAGCAGGCAGGCCTGGAGCCCTACTTCGACTTCATCATCACCATTGGGCACTCAAGACTG
Seq A exon
AACAAGGAGAATGACACGCTCAAGGCCCTGCTGAAGGCCAACGTGGAGAAGCCAGTGAAGCTGGAGGTGTTCAACATGAAGACCATGAAAGTGCGTGAGGTGGAGGTGGTTCCCAGCAACATGTGGGGCGGCCAGGGCCTGCTGGGCGCCAGCGTCCGCTTCTGCAGCTTCCGCCGGGCCAGCGAGCACGTGTGGCATGTGCTG
Seq C2 exon
GATGTGGAACCCTCTTCACCTGCTGCCCTCGCAGGCCTGCGCCCCTACACAGACTACGTTGTGGGCTCGGACCAGATCCTCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047135-'18-5,'18-1,19-5=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
PF044959=GRASP55_65=PU(34.3=69.1)
C2:
PF044959=GRASP55_65=FE(20.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACTCCCCCGCCCAG
R:
GATCTGGTCCGAGCCCACAA
Band lengths:
153-357
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]