HsaINT0070789 @ hg38
Intron Retention
Gene
ENSG00000114745 | GORASP1
Description
golgi reassembly stacking protein 1 [Source:HGNC Symbol;Acc:HGNC:16769]
Coordinates
chr3:39101016-39102881:-
Coord C1 exon
chr3:39102678-39102881
Coord A exon
chr3:39101103-39102677
Coord C2 exon
chr3:39101016-39101102
Length
1575 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GTTTGCGGTTCTTTCCCCAGGAT
3' ss Score
11.54
Exon sequences
Seq C1 exon
AACAAGGAGAATGACACCCTGAAGGCACTACTGAAAGCCAATGTGGAGAAGCCCGTGAAGCTGGAGGTGTTCAATATGAAGACCATGAGGGTGCGCGAGGTGGAGGTGGTGCCCAGCAACATGTGGGGCGGCCAGGGCCTACTGGGTGCCAGTGTGCGCTTCTGCAGCTTCCGCAGGGCCAGTGAGCAGGTGTGGCATGTGCTG
Seq A exon
GTGAGTGTGGGGTATGGCAGGGCAGGGTGTGTCGGAAGGATGAGTTTACTGGGGCAGGTCTGGGTGTGGGCGGGGTGTGAGGGGGTACATGCAGGAGTGGAGTGGGAGCCTTGGAGCAGTGGCCAGGGAAGACTGAGGGCAGGATGTGGTCTCATTCCAGTGTCCCAGAGAGGGCAGCTCATTACTACCTGAACAGTGTATCTTGCTTCCTGTTAGCCATGACTTTGGGTACTTTCTTACCTTCTATACCTAGGTTACTTAATTTGAAAGGTAGAAATATCATCTACTGGAATGGTGGTTGGACTGCTGGAATGCTGCTGCTTTTATTATTCTCTGTGTCTCTCCGTGTGTGTGTTGCATGACAACGTTTCAGTCAACCACGGACTGCATATACAATAGTGATCCCATAAGATTATAATACCATATTTTTACTGTACCTGTTCTATGCCTGAATGTTTAGACACACAGATACTTAATTGTGTTACAGTTGCCTACAGTACTCAGTATAGTAACATGCTGTGCAGGTTTGTAGCCTAGGAGCAACAGGCCATAGCATATACTCCAGGTGTCTAGTAGGCTATGTGTAGGTTAAGTTCTATGATGTTTGCACAACAATGAAGTCAACTAACAATGCATTTCTCAGAATATATCCCTGTCATTAAGCAATGTGACTGTAAATATACTGTTTTTTCTGGTATATTCTTATATGATTAATCGATATCTTAACCTCAGTGACCAAGCTGTCATAGATGTTAGTCTGTCCACAGACACACATGCACACCCAACACCTGTGCCCATTGATGGTATCTAAGTTCTTGAATGCTCAGTCCTGTAGCCTGGTGGAAGGAGGGTGCTCTGAACTAGAAGTTGGCTGATTTGTTTTCTAGCCACTTATTTTTCTCACTGACTTCTTGGGAGAGCCTGGCCAAGTTTCTCAACTTTCACAGCCTGCCTTAATCTGCCCATGAGGGAAAGGGGACTGATGATGCAAATTGCTTTGCATTTCCCAGGGAGACTGGGAGATTGGGAGTGGTGGAACTTTCCAAGGGAGAAGGGAATCCTTATTTGTACCCAGTTTTGCTCATTGCCCTCACCTCCAACCCCTAGGAGTCTTTAGCCACATGCCTGCAGCAGAAGCAGCAATGTAGTGGGTGCTCCTGTAGCCAAGGTGTGCTTTTCTTCTTTTCATATATTTATTTATTTTTCTCAGCAACCCTATCATTAGGTACTGTGTATCTTACTTTTAATTGTGGGGAAACTGAGGCTAGGAGAGGTTCAATAATGTGTTTATAGTCATATAGCTGGGCAGCTGGAGCCAGGGGTTGAGCCCGGGGTCAGATTCCAGAGCCTGGTGCTGAGCCTTATCATGGTACTGCCCTCTGCTGGACAGGCTGTAGACCTGGGGGAGATAGGGGAATGGAGGGGTGAAATGAGGGAGTATGGGCTTGAAGCCCTGCTTAGGGATAGAGGACAAGTGTCCCACTCACTACCTCAAGAGGCAGTTCCCCCTGCCCTTTCCCATCCCCCAACCCCACCTCTAGTAGCATGGCCAGTGGTTTGCGGTTCTTTCCCCAG
Seq C2 exon
GATGTGGAACCATCTTCACCTGCTGCCCTTGCCGGCCTGCGCCCCTACACAGACTATGTGGTTGGTTCGGACCAGATTCTCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114745:ENST00000319283:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.145
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=PU(34.3=69.1)
A:
NA
C2:
PF044959=GRASP55_65=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATGACACCCTGAAGGC
R:
CTCCTGGAGAATCTGGTCCGA
Band lengths:
286-1861
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development