GgaINT0091017 @ galGal3
Intron Retention
Gene
ENSGALG00000006033 | GORASP1
Description
NA
Coordinates
chr2:5192095-5193446:+
Coord C1 exon
chr2:5192095-5192298
Coord A exon
chr2:5192299-5193359
Coord C2 exon
chr2:5193360-5193446
Length
1061 bp
Sequences
Splice sites
5' ss Seq
TTGGTGAGT
5' ss Score
9.27
3' ss Seq
CAGCTGCCATTCTTTCACAGGAT
3' ss Score
8.31
Exon sequences
Seq C1 exon
AATAAAGAAAACAATATGTTGAAAGATCTACTGAAGGCAAATGCTGAAAAAGCAGTGAAACTGGAGGTGTATAACATCAAAACAATGAAGATAAGAGAGGTGGAGGTGGTCCCCAGTAACATGTGGGGAGGACAAGGTCTTCTCGGAGCCAGCGTGAGGTTCTGCAGTTTCCAGGGAGCCAATGAACACGTGTGGCATGTTTTG
Seq A exon
GTGAGTCAGAATTCTTTGCTTCTCCAACAAGTTGTTGCTGAGCTAAGAACAGAATGTAGATTTCCATTTCAAAGCTTCCTCCAAGACAGCAATATACTATTTTGTTAGTGGAATCTATTCTATCTAAGGGGTAAACATCAAAAAGGTGTTTTATAGAATCACAGAATGGCTTGGGTTGGAAGGGACCCCAAGGATCATCAAGTTCCAACACCCCTGCCACAGGCAAGGCCACCAACCTCCAGTTCTACTGATCAAATTTGAAGCTTTTCATCTGTTTTATGTGTGTGTGTTTTCTGTTGGATGAGGTATGCCATTTAGGATTGCTAATTCATAGTCTGAGGTATTCCAGGAATGTTTTCATAAGGATTTACAGATCCTTATGCATGAGAATGTTGCTGTATGTAGAGTGCAGATGTGGGTGACTGTCTCTTGGTGGCCTGCTGGTGTTCCTATAACCTTGCTTCAAATTATATATTTTTTTAAGAGTAGTTGGTATGTAGAAGTACAGTGCTGAGATTACAAAGAGGAGAGGAACATGTCCCTGTTCAAATAGCTCAAACTTTCAAGACCAGGTTGTTGACTGTCAGTGTTGCCTGCCACTGAGAATAAAATGAACCCCAGTCCAACCAGACCGTGCAGACTGCATGGTGGGGAGAAGGATGTTTTGTCTTGTGTTGAAGAAACAGTACCAAAGCAAAAAATAAAATAAAATAAAAAAAGGATTCTGGCTCAATTGGTGTTTCTGTTGGCTCAACTTCATTGAAATACACCGAAAAATTGTCTTAAAACCAGGAGGGAGAGCTGAAAGTGTAGAACAGCTTAGGAAAGGCTGAGCTGGTGTTTTCTAAAGTCTCTGATTCTTGAAAGAAGTGCGACTTCTTACCATCTTCAAAACATCTCATTTTCAAATTGTTCCCTCTGTATTGAGTGTGTCTGACACTGCTTGAAGACTTCTGTTTTGTCTTGTAGACCAAATGTTCTTTTCTTCTGTTGTCTTTTGAGTTAGCTTGTAGTAATTTCATCTTCTGAGAGGGCAGGTGACAGCTGCCATTCTTTCACAG
Seq C2 exon
GATGTTGAACCCGCATCTCCTGCAGCTGTAGGTGGATTGCAGCCATACACTGACTACATTGTTGGATCTGATCAGATTCTGCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006033:ENSGALT00000009713:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=PU(34.3=69.1)
A:
NA
C2:
PF044959=GRASP55_65=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ATATGTTGAAAGATCTACTGAAGGCA
R:
CTCCTGCAGAATCTGATCAGATCC
Band lengths:
278-1339
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]