DreINT0012051 @ danRer10
Intron Retention
Gene
ENSDARG00000101928 | GORASP1 (2 of 2)
Description
golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:HGNC:16769]
Coordinates
chr24:41162395-41163178:+
Coord C1 exon
chr24:41162395-41162598
Coord A exon
chr24:41162599-41163091
Coord C2 exon
chr24:41163092-41163178
Length
493 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TTACCTGACTCTTCTTTCAGGAT
3' ss Score
11.87
Exon sequences
Seq C1 exon
AATAAAGAGAGCAGCACGCTGAAGGAGCTCCTGAAGGCTAATGTGGAGAAGCCGGTGAAGCTGCAGGTTTACAGCAGTAAAGTGATGAGGGTTCGAGAGCTGGAGCTGGTTCCCAGTAACCTGTGGGGCGGTCAGGGGCTCCTGGGGGCCAGTGTTCGCTTCTGCAGCTTCACCGGGGCCGATCAATACGTCTGGCACGTGCTG
Seq A exon
GTGAGTAAATACTAAATACTATAATATATTATTAATATACTAATACAGTCAGAATTATTAGCCCTAATGTACATTTTGTCCCCAACTACTGTTTAACAGAGAGAAGAACACTTTTCTAATCATAATAGTTTTAATGACTCATTTTAAAAGACAGTAGTGTTCAGCTTAAATTGACATTTAAAGGCTTAACTTAATTAGGCAAGTCATTGTATAACAGTGGTTTATTCTGTAGACAATCCAAAACAAATATTGCTGAAGGGGGCTAATAATATTGACCTTAAAATGCTTTAAAACCATTAAAAACAGCTTTTTTCTAGCTTTTATTCTATATATATATATATATATATATATATATATATATACACACATACACACATATATATATATATATATATATATATATATACACACACACACACACACACGTTTGTGTATGTAGTGTATGTGTTTATGTATTGTTTTCTGAATGTGCTTTACCTGACTCTTCTTTCAG
Seq C2 exon
GATGTGGAAGTGAATTCTCCGGCTGAACTGGCGGGACTGAAGCCTTATTCGGACTATATCATTGGTGCCGATCAGGTTCTACAGGAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101928:ENSDART00000161351:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=PU(34.3=68.1)
A:
NA
C2:
PF044959=GRASP55_65=FE(21.2=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCACGCTGAAGGAGCTC
R:
TCCTGTAGAACCTGATCGGCA
Band lengths:
279-772
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]