Special

MmuINT0072352 @ mm9

Intron Retention

Gene
ENSMUSG00000032513 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:MGI Symbol;Acc:MGI:1921748]
Coordinates
chr9:119839338-119841942:-
Coord C1 exon
chr9:119841739-119841942
Coord A exon
chr9:119839425-119841738
Coord C2 exon
chr9:119839338-119839424
Length
2314 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GTTTATCATTCTCACTTCAGGAT
3' ss Score
8.9
Exon sequences
Seq C1 exon
AACAAGGAGAACGACACGCTGAAGGCATTGCTGAAGGCCAATGTGGAGAAGCCGGTGAAGCTGGAGGTATTCAACATGAAGACCATGAAGGTGCGCGAGGTAGAGGTGGTGCCCAGCAACATGTGGGGCGGCCAGGGCCTCCTGGGAGCCAGCGTGCGCTTCTGTAGCTTCCGCAGGGCCAGCGAACACGTGTGGCATGTGCTG
Seq A exon
GTGAGTCCTGGTAGGGTGTGTGGAGTGGGCGGGGTCTGGCACACAGGAGCAGGATGGCCAGGGCTGATGGGTGGGGCAGGGATCAGAGGGCAGTGCTGTGGGATCTAGTTTTGTTCCAGTGTCCTCAGAGGACAGCGGGTGGATCGGTGCTTTTGTTAACCGTGTGACCTTGGGCATACTTGTTTCATGTTACTGTTTTGGGACAGGGTTGGAATTCACTATGTGTAGCCAGATTGGCCATAAACCTGCAGAGACCTCTAGCCTCTGTCTCCTGAGTGCAGGGACTAAAACTGTGTGCTAGCACACAGTCCACAATCTAACCCTAGGCTGCACTGCTTGCTCCACTGGCCTCAGAAGAAGCAAGTGGATCTTACTGAGTTCAAGGCCGGCCAGACCTGCATAGAGAGTTCCAGGTTGGCCAAAGCTACATAGTGAGACCCTATTTCAAAAAAATTTAAAGAAAACCATCTCCCTGCCAAGAGAGTTTATGGCAGAGTGAAGTGTAAGCGTTGAGGTCCTGGGTCTGGATCCCCAGCAGCTATGAAAAAGCCAGGACAGCAGCATTCAGCAAGGACACTGTGTAGAGTGACAGAGGACACCTGGCCACCACACTTACTCACTCAAAATTGGGGGGTGGAGGGTACCAAGGTAAAGGTCCTTGCCAACAGGCCTGGCAACCTGCGTTCACTTGCCTTGCTGCCTGAGCCCAGGCACGCCTCTGATAGACTGGAAGCTAAGCACAAGGCTCCCTCCCTGGAAGGCTGCTGGAGCCTGGGTGTCCTACACATGGCCTGTGGCCACGAGCGGCAAGGACAGTCCTAACACAGTCCAACCCAAAGCCATAAACTGCTAAAACCATTACGAGGGGCCTTGCGGAGTGTTCACCTGTACTGGAGTTCAAGCTCCGGAAGCCAGGTGGTGTGCACTTGTGACTGGCTAGGGACAGGCGAGATGGGCAGCTCCCAGGAACTCACTGCCAGGCATGGAGTCTAATTGCTAAGCTCCGGCCAAAGAGAGAATGCCTCAAAGGAGGTGAACAAGATTCCCAATGATGACACCCAAGGATATCTTGGCCTCCACAGGCACACACAGAATGAGCACATGTACACAGGCACACACACACACACACACACACACACACACACACACACACACACAGCGAGAAAAAGAGCACGTGTCCACAGGCACACACTTTTTTTTTAATGATTGGCTATGGAGATAGCTTAATGCATGAATAATGTCAATCAAACCTGAATTCAGTCCCCAGGAACCCACACTGTGGAAGGACTGTTGTCCTCTGACCTCCACGTATGCCAGGGCACACGTGCACCCACACAAGTAAGTGTGGTGGTGTTTGTAAACAAAAGCAAAGCACTAATTCTGAGGTGTGGCTTGTAAGGAGGCTGTGTGGTTCTGTAGCATGAGCTTCGAGATGGCAGCATCCTGCCTGCTACACCATCACACCAAGTAAAGAGAGGCAGGCTCTTGGAACCCACAAGAGCATATGACCCAAAACAAGTAGCCACCCCAAGCCAGAAGCTGGACAGCCCTGCCACGACCACACTGCTCTTGAGGGCTCCGGAGTCGGCCTTGTCAGCCCTTTGTGCACGGGCACGCCTTTGCACGCAGACCGCAAAGATTCTGCAGAGGCAGCTAGAACCCAACCAGCAAGCCTTCCCAGCAGGGGCACCTTCCCTCCATAGAACAGGAGACTGACCATTGCAGGGCTCTGGTGTACCACCGATACACACAGTGTCAGGTGGGCATATGAGTCTGAGAGCTAAGGCTAACATGTGGGGCAGCTCAGCCACTGAGATTCATTCCTGTACCCGTTATATAGCAACAGGCCAGAGAAACTACTATGCCATCTTTATCTATCTTGGCTGGAACAGCACTAAACACTGCAGCAGGCTTCTGGTGGTTCATGCTGGCCCACCCTTCAAATAAGGAACAAAGCCACGGGGGCTGCACAGGCAGCTCACAACCATCTGCAACTCCAGTCCCAGGGGACCCAAGGTCCTCTTGTGGCCTCCAGGAGCACTGCACACATGTGGTGCACAGATAAACATGCAGATAAAATGCCCATATATACAAAGTAATAAAATTTAAAAGAAACTAAGGTCCAGAGTTAAGAATGCCCAAGAGTGCTGCCATCTGTTCACCAGGCAGTAACTTGGGGGAGGGGAGAAACTTGGGCCCTGTGGAGAAGTCTTTCTTGAGGCCCTGCTGGGCAATAGAGGGCAAGTGTCCCCTCCCTAGAGAAGCCTCTTCTCTCTGCTTAGCGTTGAATCTTAGTTTATCATTCTCACTTCAG
Seq C2 exon
GATGTGGAGCCCTCTTCACCTGCTGCCTTGGCCGGCCTGTGCCCTTACACAGACTACATAGTTGGCTCTGACCAGATTCTCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032513-Gorasp1:NM_028976:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact





	

	
ORF disruption upon sequence inclusion





No structure available

		

			
Features


			

				
Disorder rate (Iupred):
  C1=0.000 A=NA C2=0.000
 
                        

				
Domain overlap (PFAM):

					





						

							
C1:
PF044959=GRASP55_65=PU(34.3=69.1)

							
A:
NA

							
C2:
PF044959=GRASP55_65=FE(20.4=100)

						

					

				








    
Main Inclusion Isoform:
NA





     
                   









    
Main Skipping Isoform:
ENSMUSP00000035099





     
      









    
Other Inclusion Isoforms:
NA
          









    
Other Skipping Isoforms:
NA
  



Associated events






Other assemblies


mm10




Conservation


Human
(hg38)
chr3:39101103-39102677 
ALTERNATIVE
HsaINT0070789
(GORASP1)
Human
(hg19)
chr3:39142594-39144168 
ALTERNATIVE
HsaINT0070789
(GORASP1)
Rat
(rn6)
chr8:128613813-128616193 
LOW PSI
RnoINT0066443
(Gorasp1)
Cow
(bosTau6)
chr22:12474139-12475644 
ALTERNATIVE
BtaINT0067981
(GORASP1)
Chicken
(galGal4)
chr2:5258598-5259658 
ALTERNATIVE
GgaINT0091017
(GORASP1)
Chicken
(galGal3)
chr2:5192299-5193359 
LOW PSI
GgaINT0091017
(GORASP1)
Zebrafish
(danRer10)
chr24:41162599-41163091 
LOW PSI
DreINT0012051
(GORASP1 (2 of 2))
Fruitfly
(dm6)
No conservation detected




Primers PCR

	

		

			
Suggestions for RT-PCR validation

			

				
F: 
No suggested primer sequences

				
R: 
No suggested primer sequences

				
Band lengths: 

			

		

	





	
Functional annotations
(Submit an annotation)

	


There are 0 annotated functions for this event 


		










GENOMIC CONTEXT[edit]












INCLUSION PATTERN[edit]






SPECIAL DATASETS
  • Pre-implantation embryo development
  • Muscular differentiation time course
  • Spermatogenesis cell types
  • Reprogramming of fibroblasts to iPSCs
  • Hematopoietic precursors and cell types






Retrieved from "https://vastdb.crg.eu/wiki/Special:VastDB"