RnoINT0066443 @ rn6
Intron Retention
Gene
ENSRNOG00000018047 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:RGD Symbol;Acc:621122]
Coordinates
chr8:128613726-128616397:-
Coord C1 exon
chr8:128616194-128616397
Coord A exon
chr8:128613813-128616193
Coord C2 exon
chr8:128613726-128613812
Length
2381 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GTTTATCATTCTCACCTCAGGAT
3' ss Score
8.05
Exon sequences
Seq C1 exon
AACAAGGAGAATGACACGCTGAAGGCACTGCTGAAGGCTAATGTGGAGAAGCCGGTGAAGCTGGAGGTGTTCAACATGAAGACCATGAGGGTGCGAGAGGTGGAGGTGGTGCCCAGCAACATGTGGGGCGGCCAGGGCCTGCTGGGAGCTAGCGTGCGCTTCTGCAGCTTCCGCAGGGCCAGCGAGCACGTGTGGCATGTGCTG
Seq A exon
GTGAGTCCTGGCAGGGTGTGTGGCACGGGCGGGACAGGGATCAGAGGGCGTTGCTGTGGAATCTGGTTTTCCAGTGCCTTCAGAGGACGGCGGATTGTGTGACCTCGGGCATACTTATTTTCATGTTATTGCTGTCTTGGGACAGGGTCTCACTGTGACTAGCCTGGAATTCACTGTGTAGCCAGACTGGCCATGAATCTGCAGAGACCCACTAATTTCTGTCTCCTGAGTGCTGGGATTAAAAGCTCGTGCCAGCATACCTGGCAACCCTCAGCACCCTTAACTCCCATACCTTAGTTTTCATTTTAAATCTTATTACTTTGTGCATATGGGCATTTTGTCTGCCTGTATGTCTGTGCACCTGCGTGCGGTGCCCCTGGAGGCTACAGGAGGACCTTGGGTCCCCTGGGACGGGAGTTGCAGATGGTTGTGAGCTGCCGTGTGGGTTCTGGGGATCGAACTAGAGTCTCCTGCCGGAGCAGCCAGTGCTTGACCTCCAAGCTGCCTGTTCAGCCTCCATGGCTCTGCTCCTTATTTGAAGGGCAGGCCAGCATGAAGTGCGAGAAGCCTGCTGCAGGGTTTAGTGCTGTTCCAGGCGGGACCGATAAAGATGACATAGTGCTTTCTCTGGCCTGCTGCTCCATAACGGGTACACGAGTGAACGAGTGACTGAGCTGCCCCAGGTGTTATGTTAGGTCTCAGACCCACATGCACACCCGGCGTCGTGTGCATCGGTGGCACACCGGAGTTCTTCCATGCTCAGTCTCCTGCTTCGGTGGAGGGAGGGTGCCCCTGCTGGAAGGATTGCTGGTTGGGCTGCCTCTGTTGAATCTTTGCGGTCTGCATGCAAAGGTGCACCCTCGCACAAAGGGCCGACGAGGCCAACTCCAAAGCACTCGAGAGCAGTGTGGTTGCAACAGGGCTGTCCGGCCTCTGGCTTGGGGTGGCCACTTTTTTGGGTCACATGTTCCAGGGGTCTGGACTTGTGGGTTTCAGGAGCACGTCTCTTTACTCAGTGCGGTGGTGTAGTAAGCGTGATGTTGTCGTCTACGAAGCTCGTGTTACAGAACCACACAGCCTCGTTAACAAAACACATCTCAGGATTAGTGCTTTGTTCTTATATCCAAACACTACATTTATCTTGTGTGGGTGCACGTACGTGGGTGCTGGCACACGTGGAGGTCAGAGGACAACTGTCCTTCCACTCTATGGGTTCCTGGGGACTGAACTTAGGTCTGACTATTATTCATGCATTAAGCTATCTCGATAGCCGATCCTTTAAAAAGAAGTGTGTGTGTGTGTATTTATATGTATATATGTGCTCGTGTTGTGTATGCCTGTGGACACGTGCTCATTCTGTGTGTGCCTGTGGACACGTGTTTATTCTGTGTGTGCATGTGGGGGCCAAGATATCTTTGGGTATCATCATTGGGAATCTCGTTCACCTCCTTTGAGACAGTCTCTTCGGCCTAAGCTCAGCAATTAGACTACATGCCTGGCAGTGCATCCCCGGGAGCTGCCTGTCTCCCCTGTCTTCCCCCGTCTCCCCCTTTCCCCCTCCCTATTAAGTCCCAAGTGCACACCAGCTGGGTTCCAGAGCTTGAACGCAGATAGAGGTGAACACTCAGTTGGTTGAGCCACCCCCAAGGCCCCATCGATGGCCACATGCAGGGCACCTGTGCTTTGATAGAGCTTTCCAGGGAAATGGGGGAGCCTCCTGCTTAGCTGCCCCCTCACAGCCCCAGTCTATCAGAGGCGCGCCTGGGCACAGGCAGCAAGGCAAGTGCCTGCTGAGCTAACCTGGTACATCCCGCCCCCAATTTTGTGTATGTGCAAGGGTGGCGGCCAGGCGTTAACCCTGGTATCCTCTCTCTTTCTACACTGTATTTATGAGACAGCATTGCTCATTTCACCTCCTGCCGCTGCCCTGCTTTTCCACAGCTGCTGGGGATTTGAACCCAGGACCTTGGGCTTACACTTCATTCTGCCATAGGCTGTCTTGGTTTTAAGTTTTATGAAACAGGGTCTCACTATGTAGCTTTGGCTGACCTGGAACTCTGTGTAGATCCAGCCAGTCTTGAATTCAGAAAGATCCACTTGCCCCTGCCTCCCGAGTTCTGGGATCTGGAGGGGTTCAGCAGTGCTTTTCCCGCATAGGCCTGTGGCCAGTGTGGCAGTGCAGCCTACGGTTAGATTTGGACTGTTTGCAGCTGCTGCTGTCTGCTCGCCAGGCTGTAACTTGGGGGAGGGAAGAAACTTGGGCCCGGTGAAGAAGTCGTCTTGCTCTAGGCCCTGCTGGGCAGTAGAGGACAAGTGTCTTCCTCCCTAGAGAAGCCTCTTTCTGCCTAGCAACAAGTCTTAGTTTATCATTCTCACCTCAG
Seq C2 exon
GATGTGGAGCCCTCTTCACCCGCTGCCTTGGCCGGCCTGCGCCCTTACACAGACTACATTGTTGGCTCTGACCAGATCCTCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018047:ENSRNOT00000024408:3
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=PU(34.3=69.1)
A:
NA
C2:
PF044959=GRASP55_65=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]