HsaINT0070789 @ hg19
Intron Retention
Gene
ENSG00000114745 | GORASP1
Description
golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:16769]
Coordinates
chr3:39142507-39144372:-
Coord C1 exon
chr3:39144169-39144372
Coord A exon
chr3:39142594-39144168
Coord C2 exon
chr3:39142507-39142593
Length
1575 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
GTTTGCGGTTCTTTCCCCAGGAT
3' ss Score
11.54
Exon sequences
Seq C1 exon
AACAAGGAGAATGACACCCTGAAGGCACTACTGAAAGCCAATGTGGAGAAGCCCGTGAAGCTGGAGGTGTTCAATATGAAGACCATGAGGGTGCGCGAGGTGGAGGTGGTGCCCAGCAACATGTGGGGCGGCCAGGGCCTACTGGGTGCCAGTGTGCGCTTCTGCAGCTTCCGCAGGGCCAGTGAGCAGGTGTGGCATGTGCTG
Seq A exon
GTGAGTGTGGGGTATGGCAGGGCAGGGTGTGTCGGAAGGATGAGTTTACTGGGGCAGGTCTGGGTGTGGGCGGGGTGTGAGGGGGTACATGCAGGAGTGGAGTGGGAGCCTTGGAGCAGTGGCCAGGGAAGACTGAGGGCAGGATGTGGTCTCATTCCAGTGTCCCAGAGAGGGCAGCTCATTACTACCTGAACAGTGTATCTTGCTTCCTGTTAGCCATGACTTTGGGTACTTTCTTACCTTCTATACCTAGGTTACTTAATTTGAAAGGTAGAAATATCATCTACTGGAATGGTGGTTGGACTGCTGGAATGCTGCTGCTTTTATTATTCTCTGTGTCTCTCCGTGTGTGTGTTGCATGACAACGTTTCAGTCAACCACGGACTGCATATACAATAGTGATCCCATAAGATTATAATACCATATTTTTACTGTACCTGTTCTATGCCTGAATGTTTAGACACACAGATACTTAATTGTGTTACAGTTGCCTACAGTACTCAGTATAGTAACATGCTGTGCAGGTTTGTAGCCTAGGAGCAACAGGCCATAGCATATACTCCAGGTGTCTAGTAGGCTATGTGTAGGTTAAGTTCTATGATGTTTGCACAACAATGAAGTCAACTAACAATGCATTTCTCAGAATATATCCCTGTCATTAAGCAATGTGACTGTAAATATACTGTTTTTTCTGGTATATTCTTATATGATTAATCGATATCTTAACCTCAGTGACCAAGCTGTCATAGATGTTAGTCTGTCCACAGACACACATGCACACCCAACACCTGTGCCCATTGATGGTATCTAAGTTCTTGAATGCTCAGTCCTGTAGCCTGGTGGAAGGAGGGTGCTCTGAACTAGAAGTTGGCTGATTTGTTTTCTAGCCACTTATTTTTCTCACTGACTTCTTGGGAGAGCCTGGCCAAGTTTCTCAACTTTCACAGCCTGCCTTAATCTGCCCATGAGGGAAAGGGGACTGATGATGCAAATTGCTTTGCATTTCCCAGGGAGACTGGGAGATTGGGAGTGGTGGAACTTTCCAAGGGAGAAGGGAATCCTTATTTGTACCCAGTTTTGCTCATTGCCCTCACCTCCAACCCCTAGGAGTCTTTAGCCACATGCCTGCAGCAGAAGCAGCAATGTAGTGGGTGCTCCTGTAGCCAAGGTGTGCTTTTCTTCTTTTCATATATTTATTTATTTTTCTCAGCAACCCTATCATTAGGTACTGTGTATCTTACTTTTAATTGTGGGGAAACTGAGGCTAGGAGAGGTTCAATAATGTGTTTATAGTCATATAGCTGGGCAGCTGGAGCCAGGGGTTGAGCCCGGGGTCAGATTCCAGAGCCTGGTGCTGAGCCTTATCATGGTACTGCCCTCTGCTGGACAGGCTGTAGACCTGGGGGAGATAGGGGAATGGAGGGGTGAAATGAGGGAGTATGGGCTTGAAGCCCTGCTTAGGGATAGAGGACAAGTGTCCCACTCACTACCTCAAGAGGCAGTTCCCCCTGCCCTTTCCCATCCCCCAACCCCACCTCTAGTAGCATGGCCAGTGGTTTGCGGTTCTTTCCCCAG
Seq C2 exon
GATGTGGAACCATCTTCACCTGCTGCCCTTGCCGGCCTGCGCCCCTACACAGACTATGTGGTTGGTTCGGACCAGATTCTCCAGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114745-GORASP1:NM_031899:3
Average complexity
IR-S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=NA C2=0.156
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=PU(60.0=97.7),PF0004116=fn3=PU(59.6=79.1)
A:
NA
C2:
PF044959=GRASP55_65=FE(20.4=100)
Main Inclusion Isoform:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAATGACACCCTGAAGGC
R:
CTCCTGGAGAATCTGGTCCGA
Band lengths:
286-1861
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)