HsaINT0070788 @ hg38
Intron Retention
Gene
ENSG00000114745 | GORASP1
Description
golgi reassembly stacking protein 1 [Source:HGNC Symbol;Acc:HGNC:16769]
Coordinates
chr3:39102678-39103553:-
Coord C1 exon
chr3:39103473-39103553
Coord A exon
chr3:39102882-39103472
Coord C2 exon
chr3:39102678-39102881
Length
591 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
CAGCCCCATTGCCCCCACAGAAC
3' ss Score
7.79
Exon sequences
Seq C1 exon
GTGCAGGAGAACTCCCCAGCCCAGCAGGCGGGCCTGGAGCCCTACTTTGACTTCATCATCACCATTGGGCACTCGAGGCTG
Seq A exon
GTGAGTTCCCCAACCTGCCTCTGCTTTGCTTGCTTATGTGTGTTTGTGTGTCTTCATCTGTCCCACAGGGGGCCCCAGTCTACCCTTCCCTCCCTTTTTTTCTAAAGGGAGTCCCAGCCCTGTCTCCCCTTCTTCCAGGGCTGTACTCAGAGCCTGACTGGGGCCCTGCCCAGTGCTCAGCTTCTGAGCTCTGTGGGGTGGACAGAGGACATATGGCCTCTTGGAGGTGGCAACAAGGCCCAAGGGGCCTGCCTCCTGGGGCATGAGGGATATGAGGGCCCTGGCCAAGGGGCAGCTCAGAGTGGGGCAGCACTGGAATGCTGTGGATCTGGGAGGCTTTTTGCTTGCTTTGTTTTTTCTGGCAGGCTGAGGAAGGTTTGGCAGTGCTTGGGGAAGGTGGGGGTCCCAGTGGCTGCAGGCTCAACCCTGGTCTGTGAACCTGGCCCATCCACTACCTTGGCCCATCCCCACAGTGACCCTGCTGAGGGCTGCTGCCCACTAAGGCCCTTGCCCCATCTCAGGCCCAGACTTGTCTGAGGGTCCTAGCCTGGGCATGAGGTGGCCTTGGAGTCAGCCCCATTGCCCCCACAG
Seq C2 exon
AACAAGGAGAATGACACCCTGAAGGCACTACTGAAAGCCAATGTGGAGAAGCCCGTGAAGCTGGAGGTGTTCAATATGAAGACCATGAGGGTGCGCGAGGTGGAGGTGGTGCCCAGCAACATGTGGGGCGGCCAGGGCCTACTGGGTGCCAGTGTGCGCTTCTGCAGCTTCCGCAGGGCCAGTGAGCAGGTGTGGCATGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000114745:ENST00000319283:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.091 A=NA C2=0.000
Domain overlap (PFAM):
C1:
PF044959=GRASP55_65=FE(27.6=100)
A:
NA
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACTCCCCAGCCCAG
R:
GCACATGCCACACCTGCTC
Band lengths:
278-869
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Genotype-Tissue Expression Project (GTEx)
- Autistic and control brains
- Pre-implantation embryo development