DreINT0012050 @ danRer10
Intron Retention
Gene
ENSDARG00000101928 | GORASP1 (2 of 2)
Description
golgi reassembly stacking protein 1, 65kDa [Source:HGNC Symbol;Acc:HGNC:16769]
Coordinates
chr24:41162128-41162598:+
Coord C1 exon
chr24:41162128-41162208
Coord A exon
chr24:41162209-41162394
Coord C2 exon
chr24:41162395-41162598
Length
186 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGA
5' ss Score
7.54
3' ss Seq
TAGTGTGTGCTTGTGCTCAGAAT
3' ss Score
5.16
Exon sequences
Seq C1 exon
GTTCAGGAGAATTCTCCAGCAGAGAGAGCCGGTCTGGAGCCCTTCTTTGACTTCATTCTGTCAATTGGACACACCAGACTG
Seq A exon
GTGAGAAATAAACTCCTTAATCTTTAACCTAGTGAAGCCTTTAAATGTCACTTGAAGCTGAATACCAGTGTCTTAAAAATATCTAGTCTGATATTATGTGCTGTCATCATGATTCAGACCTTACCTGTACATACAGGTATACTAATATAACATGTTTTTATTAATATAGTGTGTGCTTGTGCTCAG
Seq C2 exon
AATAAAGAGAGCAGCACGCTGAAGGAGCTCCTGAAGGCTAATGTGGAGAAGCCGGTGAAGCTGCAGGTTTACAGCAGTAAAGTGATGAGGGTTCGAGAGCTGGAGCTGGTTCCCAGTAACCTGTGGGGCGGTCAGGGGCTCCTGGGGGCCAGTGTTCGCTTCTGCAGCTTCACCGGGGCCGATCAATACGTCTGGCACGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSDARG00000101928:ENSDART00000161351:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.143 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF044959=GRASP55_65=PU(34.3=68.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGTCTGGAGCCCTTCTTTGAC
R:
CGTGCCAGACGTATTGATCGG
Band lengths:
250-436
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]