RnoINT0066442 @ rn6
Intron Retention
Gene
ENSRNOG00000018047 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:RGD Symbol;Acc:621122]
Coordinates
chr8:128616194-128616926:-
Coord C1 exon
chr8:128616846-128616926
Coord A exon
chr8:128616398-128616845
Coord C2 exon
chr8:128616194-128616397
Length
448 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
GCTCCTCCCTGTCCCTGCAGAAC
3' ss Score
12.37
Exon sequences
Seq C1 exon
GTACAAGAGAACTCGCCAGCCCAGCAGGCGGGCCTGGAGCCCTACTTTGACTTCATCATCACCATCGGGCACTCAAGGCTG
Seq A exon
GTGAGGTCCCCACTACCCCATCCCTAAAGGCTGCCCCTGTTTGCTTTTGCCTCCTTTTCTCTTCCTGGGTGGACCAGGGCCACAGAGGGATATTTGGAGGTGGCCACCAGGCCTAAGAAGGCTGCCTTTCAAGGCATATGAGGCCTTAGGACATGCTTGCTTTGTTCGTTTTCTGGAAGGCTTGGGGACCAAAACTTGGTGTGCCTGAACTGGGTGGTGCTGGTGCTGCCTGGAGCTGGGTGGTGGCCGGGGTGGCTGCAGGCCCAAACCCAGCCTGTGAAGCAGGGCCCAGCGACTGACTGTTTCAGCTTACCAGGCCCCGATGCCTCTCAGGTCCTGACCTGTCCAAGGGTTCTGGCCTTGGGGTAGGGGGTATGGGGGGTGGTGTTTCTGGCCTGGGTGTGGGGGGAGGTCTCAGACTGAGCCAAGCTCCTCCCTGTCCCTGCAG
Seq C2 exon
AACAAGGAGAATGACACGCTGAAGGCACTGCTGAAGGCTAATGTGGAGAAGCCGGTGAAGCTGGAGGTGTTCAACATGAAGACCATGAGGGTGCGAGAGGTGGAGGTGGTGCCCAGCAACATGTGGGGCGGCCAGGGCCTGCTGGGAGCTAGCGTGCGCTTCTGCAGCTTCCGCAGGGCCAGCGAGCACGTGTGGCATGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018047:ENSRNOT00000024408:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.300 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAAGAGAACTCGCCAGCC
R:
ACATGCCACACGTGCTCG
Band lengths:
281-729
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]