BtaINT0067980 @ bosTau6
Intron Retention
Gene
ENSBTAG00000047135 | GORASP1
Description
Bos taurus golgi reassembly stacking protein 1, 65kDa (GORASP1), mRNA. [Source:RefSeq mRNA;Acc:NM_001046518]
Coordinates
chr22:12475645-12476585:-
Coord C1 exon
chr22:12476505-12476585
Coord A exon
chr22:12475849-12476504
Coord C2 exon
chr22:12475645-12475848
Length
656 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
CAGCCCTGCTGCCCTTGCAGAAC
3' ss Score
8.24
Exon sequences
Seq C1 exon
GTGCAGGAGAACTCCCCCGCCCAGCAGGCAGGCCTGGAGCCCTACTTCGACTTCATCATCACCATTGGGCACTCAAGACTG
Seq A exon
GTGAGGCCCCCCTCCTGCCTCTGGGGTGGGTGGGTGGGTGTGTGTGGGTGTGTGTGTGTGTGACTGGTGTGTGTGTGTGTGTGTGTGAGACTGGTGAGGCCTCCCCACCACCTCTGCCGTGTGTGTGTCTGCGTGTGTGTATATGTTTGTGTTCTGCTGTCCCATGGGAACCCCAGCCCTGCCTGCCTTTTCTGCTGGAGGGAGACCAAACCCCATCTCCCCCTCTTCCAGGGCAACAGTGAGCCTGATGGGGGCCCTGCCTGGAGTTTAGCCCTTGGGCCCTCCGGGGTGGGTCAGAGGCAGGGGGACTCCTGGCACTGTCCACAAAGCCTCCAGGCCTGCCGAGAGGGCTGAGGGCTCTGGAAGGGGCCTTTCAGGGTGGGCCGTGCGGCAGTGCTCTGGACTCAGGGGGCTCTTTGCTTACTTTGTGGTGTTTTCTGGGGGCCCCAAGGGAGGAAGGTTTAGCAGGGCTTAGGGATGCTTAGGGTCCAGTGGCTGCAGGCCCAGCCCTGATCTGTGGACCCAGCCCTGCACCAGGTCTCTCGGGGGCAGCTGGCCACCAAGGCCCTCACCCTATATCAGACCCAGACTTGTCTGGGGGTTCTGGCTGGGTGTTTTGAGGGGGGCTCCAGGAGTCAGCCCTGCTGCCCTTGCAG
Seq C2 exon
AACAAGGAGAATGACACGCTCAAGGCCCTGCTGAAGGCCAACGTGGAGAAGCCAGTGAAGCTGGAGGTGTTCAACATGAAGACCATGAAAGTGCGTGAGGTGGAGGTGGTTCCCAGCAACATGTGGGGCGGCCAGGGCCTGCTGGGCGCCAGCGTCCGCTTCTGCAGCTTCCGCCGGGCCAGCGAGCACGTGTGGCATGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000047135:ENSBTAT00000065507:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion (1st CDS intron)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAGAACTCCCCCGCCCAG
R:
CAGCACATGCCACACGTG
Band lengths:
279-935
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]