MmuINT0072351 @ mm10
Intron Retention
Gene
ENSMUSG00000032513 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:MGI Symbol;Acc:MGI:1921748]
Coordinates
chr9:119932621-119933342:-
Coord C1 exon
chr9:119933262-119933342
Coord A exon
chr9:119932825-119933261
Coord C2 exon
chr9:119932621-119932824
Length
437 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
3' ss Seq
GCTCCTCCCTGACCCTGCAGAAC
3' ss Score
10.1
Exon sequences
Seq C1 exon
GTACAAGAGAACTCGCCGGCCCAGCAGGCAGGCCTGGAGCCCTACTTCGACTTCATCATCACCATCGGGCACTCGAGGCTG
Seq A exon
GTGAGGCTCCCCACTGCCCCGTCCCCACAGGCTGCTCCTGTTCGCTTCTGCCTCCTTTTTTCTTCCCCTGTGACCAGGGCCACAGAGGGACATTTGGAGGCATCCAGCAGGCCTAAGAAGGCTGCCTTTCAAGACATATGAGGCCTTAGGATGTGGCCCTAAGAGGCCTTTTGCTTGCTTTGTTAGTTTTCTGGAAGGCTTGGGGACCAAAGCTTGGGGTGCCTGAACTGGGTGATGCTGGCTCAGGTGCTGCCTGGAGCTGGGTGGTGGCTGTGGTGGCTGCAGGCCCAAACCTAGCCTGTGAAGCCGGGCCCAGCAATCGTTTCAGTTTGCCCTCACACCCTGTGCTCCATGCCTCTCAGTCCCTGACCAGTCTAAGGGTTCTGGCCCAGGGGTGGGAGGTCTCAGACAGAGCCAGCTCCTCCCTGACCCTGCAG
Seq C2 exon
AACAAGGAGAACGACACGCTGAAGGCATTGCTGAAGGCCAATGTGGAGAAGCCGGTGAAGCTGGAGGTATTCAACATGAAGACCATGAAGGTGCGCGAGGTAGAGGTGGTGCCCAGCAACATGTGGGGCGGCCAGGGCCTCCTGGGAGCCAGCGTGCGCTTCTGTAGCTTCCGCAGGGCCAGCGAACACGTGTGGCATGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032513:ENSMUST00000035099:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACAAGAGAACTCGCCGGC
R:
AGCACATGCCACACGTGTTC
Band lengths:
284-721
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types