GgaINT0091016 @ galGal3
Intron Retention
Gene
ENSGALG00000006033 | GORASP1
Description
NA
Coordinates
chr2:5191212-5192298:+
Coord C1 exon
chr2:5191212-5191292
Coord A exon
chr2:5191293-5192094
Coord C2 exon
chr2:5192095-5192298
Length
802 bp
Sequences
Splice sites
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
3' ss Seq
TGTCTTTCTGCACTCTGTAGAAT
3' ss Score
8.23
Exon sequences
Seq C1 exon
GTTCAGGAGAACTCCCCCGCTCAGCAAGGAGGGCTGGAGCCTTTCTTTGACTTCATCATTGCGATAGGACACACCAGGCTG
Seq A exon
GTGAGTCTCTCTAATAAAACTGTATTTTCTATTCTTTTTTTCCTGGGGTATCATCATTATAAGAGGTAGAAGCCAAAGCTGTCAGAGTAGAGAATGTCACACTGGGCGTTGTCTGTGGTATTAAAAAGGTAAACCAAAACCTGAAGGGTCTTAGCGATGCCTTCAGTCACCCTGGCTTCTTCACAGGTTCACTCTGTGCTTGTGGTGTTTATTCATGGGTATTTTCTGCCACAAGGTGAATATCGAGCTGGTGAGTCAGTGGTGAGAGCTCAACATTTGTTTAAGCAAACTTGTTTCAACGTTTGATAAGGCAGGGGAAAGAATCATGGACAGGAAGAAAAGTGCCACGTGGGCCTGTCTGCTTATGGTTTAGAGCTGGTCACACGGTTCCTGTATGGTGAGTTACTGAGGAAGAATTGAGTACATTTTAATGCATTGTTTTAGTTTGGAAGGCTCTCATCTTTTGCCCAAGGATCAGTACTGATCAGCCATGAAGTGCTGCCACTTATTGATGCGACTGTGTAGTTAAGATCTGACATTCCTGACTTACCAGAGGTTAAAAGAAGAGAAAAGTAAGCAATTAAACTGAATGATAGTAGTTACTGTTTTAGAAGATCATGAGCTGACGGCACAGACTGCTTCTGGATAAAAGAAAACTGCACTGCTGGACTGATTGTAAAACATTAAGTCCAATGGCTGTTTTGGTTCTTTGTATTCAGATTCTGACACAAGCATGACATCTGTGTTACAGGTGCAACTAGGGATAGCATTAACCATATGTATGTCTTTCTGCACTCTGTAG
Seq C2 exon
AATAAAGAAAACAATATGTTGAAAGATCTACTGAAGGCAAATGCTGAAAAAGCAGTGAAACTGGAGGTGTATAACATCAAAACAATGAAGATAAGAGAGGTGGAGGTGGTCCCCAGTAACATGTGGGGAGGACAAGGTCTTCTCGGAGCCAGCGTGAGGTTCTGCAGTTTCCAGGGAGCCAATGAACACGTGTGGCATGTTTTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006033:ENSGALT00000009713:2
Average complexity
IR
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence inclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.148 A=NA C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NA
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Main Inclusion Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGAGAACTCCCCCGCTCAG
R:
CATGCCACACGTGTTCATTGG
Band lengths:
275-1077
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]