MmuEX6069848 @ mm10
Exon Skipping
Gene
ENSMUSG00000032513 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:MGI Symbol;Acc:MGI:1921748]
Coordinates
chr9:119932621-119937565:-
Coord C1 exon
chr9:119937458-119937565
Coord A exon
chr9:119933262-119933342
Coord C2 exon
chr9:119932621-119932824
Length
81 bp
Sequences
Splice sites
3' ss Seq
GCACCTCTGCTCTGGAACAGGTA
3' ss Score
6.85
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
GGCCTGGCCCCACGTGACTAGGCCACGCAGCAGCGGGAGAGGGCGGCCATGGGGCTAGGGGCAAGCAGCGAGCAGCCGGCGGGCGGCGAGGGCTTCCATCTGCACGGG
Seq A exon
GTACAAGAGAACTCGCCGGCCCAGCAGGCAGGCCTGGAGCCCTACTTCGACTTCATCATCACCATCGGGCACTCGAGGCTG
Seq C2 exon
AACAAGGAGAACGACACGCTGAAGGCATTGCTGAAGGCCAATGTGGAGAAGCCGGTGAAGCTGGAGGTATTCAACATGAAGACCATGAAGGTGCGCGAGGTAGAGGTGGTGCCCAGCAACATGTGGGGCGGCCAGGGCCTCCTGGGAGCCAGCGTGCGCTTCTGTAGCTTCCGCAGGGCCAGCGAACACGTGTGGCATGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032513-'0-4,'0-1,10-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACGTGACTAGGCCA
R:
GAATACCTCCAGCTTCACCGG
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types