MmuEX6069848 @ mm9
Exon Skipping
Gene
ENSMUSG00000032513 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:MGI Symbol;Acc:MGI:1921748]
Coordinates
chr9:119841739-119846676:-
Coord C1 exon
chr9:119846576-119846676
Coord A exon
chr9:119842380-119842460
Coord C2 exon
chr9:119841739-119841942
Length
81 bp
Sequences
Splice sites
3' ss Seq
GCACCTCTGCTCTGGAACAGGTA
3' ss Score
6.85
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
CCCCACGTGACTAGGCCACGCAGCAGCGGGAGAGGGCGGCCATGGGGCTAGGGGCAAGCAGCGAGCAGCCGGCGGGCGGCGAGGGCTTCCATCTGCACGGG
Seq A exon
GTACAAGAGAACTCGCCGGCCCAGCAGGCAGGCCTGGAGCCCTACTTCGACTTCATCATCACCATCGGGCACTCGAGGCTG
Seq C2 exon
AACAAGGAGAACGACACGCTGAAGGCATTGCTGAAGGCCAATGTGGAGAAGCCGGTGAAGCTGGAGGTATTCAACATGAAGACCATGAAGGTGCGCGAGGTAGAGGTGGTGCCCAGCAACATGTGGGGCGGCCAGGGCCTCCTGGGAGCCAGCGTGCGCTTCTGTAGCTTCCGCAGGGCCAGCGAACACGTGTGGCATGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000032513-'0-1,'0-0,2-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.750 A=0.148 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CCCCACGTGACTAGGCCA
R:
GAATACCTCCAGCTTCACCGG
Band lengths:
173-254
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: