RnoEX6038255 @ rn6
Exon Skipping
Gene
ENSRNOG00000018047 | Gorasp1
Description
golgi reassembly stacking protein 1 [Source:RGD Symbol;Acc:621122]
Coordinates
chr8:128616194-128622337:-
Coord C1 exon
chr8:128622249-128622337
Coord A exon
chr8:128616846-128616926
Coord C2 exon
chr8:128616194-128616397
Length
81 bp
Sequences
Splice sites
3' ss Seq
TGGCCTCTGCCCTGTAACAGGTA
3' ss Score
8.73
5' ss Seq
CTGGTGAGG
5' ss Score
8.3
Exon sequences
Seq C1 exon
AGGCCACGCAGCAGAGGGAGAGGACGGCCATGGGGCTAGGGGCAAGCAGCGAGCAGCCGGCGGGCGGCGAGGGCTTCCATCTGCACGGG
Seq A exon
GTACAAGAGAACTCGCCAGCCCAGCAGGCGGGCCTGGAGCCCTACTTTGACTTCATCATCACCATCGGGCACTCAAGGCTG
Seq C2 exon
AACAAGGAGAATGACACGCTGAAGGCACTGCTGAAGGCTAATGTGGAGAAGCCGGTGAAGCTGGAGGTGTTCAACATGAAGACCATGAGGGTGCGAGAGGTGGAGGTGGTGCCCAGCAACATGTGGGGCGGCCAGGGCCTGCTGGGAGCTAGCGTGCGCTTCTGCAGCTTCCGCAGGGCCAGCGAGCACGTGTGGCATGTGCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000018047-'0-2,'0-1,6-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.800 A=0.300 C2=0.000
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
PF044959=GRASP55_65=PU(34.3=69.1)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CAGCAGAGGGAGAGGACGG
R:
ACCTCTCGCACCCTCATGG
Band lengths:
182-263
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]