GgaEX6018326 @ galGal3
Exon Skipping
Gene
ENSGALG00000006112 | F1NDB7_CHICK
Description
NA
Coordinates
chr2:5479847-5486492:+
Coord C1 exon
chr2:5479847-5480174
Coord A exon
chr2:5480202-5480317
Coord C2 exon
chr2:5486481-5486492
Length
116 bp
Sequences
Splice sites
3' ss Seq
GAAACACCTGGGAATTACAGACA
3' ss Score
-1.17
5' ss Seq
CAGGTAGGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
GTGCTCAACCTGTTCCTTGCCTTGCTGCTCAGCTCTTTCAGTGCTGACAACCTTTCGGCACCAGACGAGGATGGAGAGATGAACAACCTGCAGCTTGCCTTTGCTCGGATCAACAGGGGTCTTCAGTATGTGAAACACACCACGTGGGATTTTTGCTGCAACGTCCTCCGGCATCCCAAGACAACAGCTGAGAAGAAGGCAATGATGAAGCTTGCTGCCCAGAATACAGGTGCCCTTAACAATTGTGTCAACAGCCACCCAACTGCTGAGCTTGGCAAAGAGATGGAGAATCACAAAGAGAACCACACAGAGGATGGGACGAATAAAA
Seq A exon
ACAACGATGACTTTATGACCAATCCTGACCTATCAATTTGTGTTCCTATTGCTGTGGGAGAGTCTGATATCGAGGAGGAAGATGAGGAGCAAAGCACGTTTACAGAAATGGAGCAG
Seq C2 exon
TCTGAATCCACC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000006112-'19-23,'19-18,20-23=AN
Average complexity
A_C3
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.188 A=0.777 C2=1.000
Domain overlap (PFAM):
C1:
PF0052026=Ion_trans=PD(4.2=12.1),PF065128=Na_trans_assoc=PU(19.6=63.6)
A:
PF065128=Na_trans_assoc=FE(14.1=100)
C2:
PF065128=Na_trans_assoc=FE(1.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]