GgaEX6018560 @ galGal3
Exon Skipping
Gene
ENSGALG00000007260 | F1NB51_CHICK
Description
NA
Coordinates
chr2:14299479-14304869:-
Coord C1 exon
chr2:14304764-14304869
Coord A exon
chr2:14301531-14303341
Coord C2 exon
chr2:14299479-14299659
Length
1811 bp
Sequences
Splice sites
3' ss Seq
TTTCTTTTTTTAATCTTTAGGAG
3' ss Score
10.41
5' ss Seq
CAGGTACCG
5' ss Score
10.05
Exon sequences
Seq C1 exon
AGACATGTGACGCAGTCCAGTGGTAATCGAAAATTCAAGTGCACTGAATGTGGAAAAGCTTTCAAATATAAACATCATCTAAAGGAACACCTACGAATCCACAGTG
Seq A exon
GAGAGAAGCCATATGAGTGCCCAAACTGCAAGAAACGTTTTTCCCATTCTGGTTCATACAGCTCACACATAAGCAGTAAGAAGTGTATTGGTTTGATGCCCGTGAATGGTCGAGCTCGGTCAGGGCTCAAGATGTCTCAGTGCTCCTCCCCTTCCCTTTCTGCATCGCCCGGTAGCCCAGCAAGACCACAGATACGACAAAAGATAGAAAATAAACCCTTGCAAGAGCAACTTCCTGTTAACCAAATTAAAACTGAACCTGTGGATTATGAATTCAAGCCCATAGTGGTTGCTTCAGGAATTAATTGTTCGACCCCTTTGCAGAATGGGGTTTTTAGTGGTGGTAGCCCGTTGCAGGCAACCAGTTCTCCTCAGGGTGTGGTGCAAGCTGTTGTTCTGCCAACAGTGGGTCTGGTGTCTCCCATAAGCATCAACTTAAGTGACATTCAAAATGTACTTAAAGTGGCAGTGGATGGTAATGTAATAAGGCAAGTATTGGAAAACAATCACGCTAATCTTGCATCCAAAGAACAAGAAACAATCAGCAATGCATCTATACAACAAGCTGGCCATTCCCTCATTTCAGCTATCAGTCTTCCTTTGGTTGACCAAGATGGGACAACCAAAATTATCATCAACTACAGCTTGGAGCAGCCAAGTCAACTTCAGGTTGTTCCCCAAAATCTAAAAAAAGAACATTCTGTTCCTACAAACAGTTGCAAAAATGAAAAGTTACCAGAAGATCTTACGGTGAAGTCTGAGAAAGATAAAAACTTTGAAGGAGAGACCAACGATAGCACTTGTCTTCTTTGTGATGACTGTCCAGGAGATCTTAATGCACTTCAAGAATTAAAGCACTATGAAACAAAAAATCCTCCTCAGCTTCCCCAGTCCAGTGGAACAGAAGCTGAGAAGCCCAGCTCCCCTGCCCCATCAGAAACTGGGGAGAACAACTTATCTCCTGGTCAGCCACCCTTAAAGAACCTTTTATCGCTCCTAAAAGCATATTATGCATTAAATGCACAACCAAGCGCAGAAGAGCTTTCAAAAATTGCCGATTCCGTGAACCTACCACTGGATGTGGTAAAAAAGTGGTTTGAAAAAATGCAAGCTGGACAAATTTCTGTGCAGTCTTCTGGACCATCTTCTCCTGAACAAGTTAAAATAAGCAGTCCCACAGATAACGATGATCAAGCAGCAACTACAAATGAGAGTGAACCCCAGAACAGCACAAACAACTCACAAAATCCGGCCAATACAAGTAAATCTCAGACTTCATCAGGGGGATCAACTCAGAATGGTTCGCGCAGTAGCACGCCATCCCCATCACCACTAAACCTTTCTTCATCAAGAAATTCACAGGGTTATACGTACACAGCAGAGGGTGTACAAGAAGAGCCACAAATGGAACCTCTTGACCTTTCACTACCAAAGCAACATGGAGAACTGTTGGAAAGATCTACCATAACTAGTGTTTACCAGAACAGTGTTTATTCTGTCCAGGAAGAACCTTTGAACTTAACTTGTGCAAAAAAAGAACCACAAAAGGACAACAGTATTACAGACTCTGATCCTATTGTAAATGTAATCCCACCAAGTGCCAATCCCATAAATATTGCTATACCTACAGTCACTGCCCAGTTACCTACAATTGTTGCCATTGCTGACCAGAACAGTGTTCCATGCTTGAGAGCTCTTGCTGCCAATAAGCAAACCATTTTGATTCCCCAGGTGGCTTATACGTACTCTACTACAGTTAGTCCTGCAGTTCAGGAAACACCACCAAAACAGACCCAAGCCAACGGAAGTCAG
Seq C2 exon
GACGAAAGGCAGGACACTAGCTCAGAAGGAGTATCGAATGTAGAAGATCAAAATGATTCTGATTCAACACCCCCAAAGAAAAAGATGAGAAAGACAGAAAATGGGATGTATGCATGTGATTTGTGTGACAAAATATTCCAGAAGAGCAGCTCATTATTGAGACATAAGTATGAACACACAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000007260-'9-9,'9-8,10-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.167 A=0.563 C2=0.623
Domain overlap (PFAM):
C1:
PF134651=zf-H2C2_2=PU(38.5=27.8)
A:
PF134651=zf-H2C2_2=PD(57.7=2.5),PF0004624=Homeobox=WD(100=8.1)
C2:
PF134651=zf-H2C2_2=PU(38.5=16.4)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACGCAGTCCAGTGGTAATCGA
R:
CTGTGTGTTCATACTTATGTCTCAA
Band lengths:
278-2089
Functional annotations
There are 1 annotated functions for this event
PMID: 10567582
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: two hybrid. ELM ID: ELMI000085; ELM sequence: PLDLS; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]