GgaEX6018773 @ galGal3
Exon Skipping
Gene
ENSGALG00000008654 | STAM
Description
NA
Coordinates
chr2:19581789-19583199:-
Coord C1 exon
chr2:19583104-19583199
Coord A exon
chr2:19582372-19582518
Coord C2 exon
chr2:19581789-19581879
Length
147 bp
Sequences
Splice sites
3' ss Seq
TAATTTTTATTTTTCTATAGGGT
3' ss Score
9.18
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CTTCTAGGAGCATGTGTATCAAACTGTGGCAAAATCTTTCATTTAGAGGTCTGTTCAAGAGACTTTGCCAGTGAAGTAAGCAATGTGTTGAATAAG
Seq A exon
GGTCATCCAAAAGTTTGTGAAAAGCTGAAAGCCCTTATGGTGGAATGGACTGATGAATTCAAAAATGACCCACAGCTTAGTTTAATATCTGCTATGATAAAAAATCTGAAGGAGCAAGGAGTTACTTTCCCAGCTATTGGTTCACAG
Seq C2 exon
GCTGCTGAGCAGGCAAAAGCAAGTCCAGCCCTCGTTGCCAAAGATCCTGGTGCAGTAGCTAACAAGAAAGAAGAAGAAGATTTAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008654-'4-6,'4-5,5-6=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.355
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(23.0=100)
A:
PF0079014=VHS=PD(28.9=79.6)
C2:
PF0280915=UIM=PU(50.0=29.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCATGTGTATCAAACTGTGG
R:
AGCTAAATCTTCTTCTTCTTTCTTGT
Band lengths:
178-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]