RnoEX6054232 @ rn6
Exon Skipping
Gene
ENSRNOG00000060817 | Stam
Description
signal transducing adaptor molecule [Source:RGD Symbol;Acc:1564499]
Coordinates
chr17:81233845-81238368:+
Coord C1 exon
chr17:81233845-81233940
Coord A exon
chr17:81235292-81235438
Coord C2 exon
chr17:81238278-81238368
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCTCGTTCCTTAGGGC
3' ss Score
12.38
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CTTCTAGGAGCATGTGTATCAAACTGTGGCAAAATTTTTCACTTAGAAGTGTGTTCAAGGGATTTCGCTAGCGAAGTAAGCAATGTGTTAAATAAG
Seq A exon
GGCCATCCTAAAGTATGTGAAAAATTAAAGGCTCTTATGGTTGAATGGACAGATGAATTTAAGAATGACCCACAGCTAAGTCTGATATCGGCAATGATTAAGAACCTCAAGGAACAGGGTGTAACATTCCCAGCCATCGGCTCTCAG
Seq C2 exon
GCTGCAGAACAAGCGAAAGCAAGCCCGGCTCTGGTAGCCAAGGACCCTGGCACTGTGGCTACCAAAAAGGAAGAAGAAGATTTAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000060817-'11-13,'11-11,12-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.581
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(23.0=100)
A:
PF0079014=VHS=PD(28.9=79.6)
C2:
PF0280915=UIM=PU(50.0=29.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TTCTAGGAGCATGTGTATCAAACTGT
R:
CTTTGGCTAAATCTTCTTCTTCCTT
Band lengths:
186-333
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]