MmuEX6099045 @ mm9
Exon Skipping
Gene
ENSMUSG00000026718 | Stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:MGI Symbol;Acc:MGI:1329014]
Coordinates
chr2:14037605-14050263:+
Coord C1 exon
chr2:14037605-14037700
Coord A exon
chr2:14039016-14039162
Coord C2 exon
chr2:14050173-14050263
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCTTGTTCCTTAGGGT
3' ss Score
12.69
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CTTCTGGGAGCATGTGTATCAAACTGTGGCAAAATTTTTCACTTAGAAGTATGTTCAAGAGACTTTGCTAGTGAAGTAAGCAATGTATTAAATAAG
Seq A exon
GGTCATCCTAAAGTATGTGAAAAATTAAAGGCTCTTATGGTTGAATGGACAGATGAATTTAAGAATGATCCACAGCTTAGTCTGATATCGGCAATGATCAAGAACCTTAAGGAACAAGGTGTAACATTCCCAGCTATTGGCTCTCAG
Seq C2 exon
GCTGCAGAACAAGCAAAAGCAAGCCCAGCTCTCGTAGCCAAGGACCCTGGGACTGTGGCTACCAAAAAGGAAGAAGAAGATTTAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026718-'8-9,'8-4,9-9=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.581
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(23.0=100),PF136461=HEAT_2=FE(27.9=100)
A:
PF0079014=VHS=PD(28.9=79.6),PF136461=HEAT_2=PD(20.7=46.9)
C2:
PF0280915=UIM=PU(50.0=29.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGGGAGCATGTGTATCA
R:
CTTTGGCTAAATCTTCTTCTTCCTT
Band lengths:
187-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: