MmuEX6099045 @ mm10
Exon Skipping
Gene
ENSMUSG00000026718 | Stam
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:MGI Symbol;Acc:MGI:1329014]
Coordinates
chr2:14115978-14128636:+
Coord C1 exon
chr2:14115978-14116073
Coord A exon
chr2:14117389-14117535
Coord C2 exon
chr2:14128546-14128636
Length
147 bp
Sequences
Splice sites
3' ss Seq
TTTTCTTTCTTGTTCCTTAGGGT
3' ss Score
12.69
5' ss Seq
CAGGTATTT
5' ss Score
7.51
Exon sequences
Seq C1 exon
CTTCTGGGAGCATGTGTATCAAACTGTGGCAAAATTTTTCACTTAGAAGTATGTTCAAGAGACTTTGCTAGTGAAGTAAGCAATGTATTAAATAAG
Seq A exon
GGTCATCCTAAAGTATGTGAAAAATTAAAGGCTCTTATGGTTGAATGGACAGATGAATTTAAGAATGATCCACAGCTTAGTCTGATATCGGCAATGATCAAGAACCTTAAGGAACAAGGTGTAACATTCCCAGCTATTGGCTCTCAG
Seq C2 exon
GCTGCAGAACAAGCAAAAGCAAGCCCAGCTCTCGTAGCCAAGGACCCTGGGACTGTGGCTACCAAAAAGGAAGAAGAAGATTTAGCCAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000026718-'7-15,'7-6,14-15=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.017 C2=0.548
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(23.3=100),PF136461=HEAT_2=FE(25.0=100)
A:
PF0079014=VHS=PD(29.3=79.6),PF136461=HEAT_2=PD(29.0=73.5)
C2:
PF0280915=UIM=PU(50.0=29.0)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTCTGGGAGCATGTGTATCA
R:
CTTTGGCTAAATCTTCTTCTTCCTT
Band lengths:
187-334
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types