GgaEX6018773 @ galGal4
Exon Skipping
Gene
ENSGALG00000008654 | STAM
Description
signal transducing adaptor molecule (SH3 domain and ITAM motif) 1 [Source:HGNC Symbol;Acc:HGNC:11357]
Coordinates
chr2:19533624-19535034:-
Coord C1 exon
chr2:19534939-19535034
Coord A exon
chr2:19534207-19534353
Coord C2 exon
chr2:19533624-19533714
Length
147 bp
Sequences
Splice sites
3' ss Seq
TAATTTTTATTTTTCTATAGGGT
3' ss Score
9.18
5' ss Seq
CAGGTATAG
5' ss Score
8.73
Exon sequences
Seq C1 exon
CTTCTAGGAGCATGTGTATCAAACTGTGGCAAAATCTTTCATTTAGAGGTCTGTTCAAGAGACTTTGCCAGTGAAGTAAGCAATGTGTTGAATAAG
Seq A exon
GGTCATCCAAAAGTTTGTGAAAAGCTGAAAGCCCTTATGGTGGAATGGACTGATGAATTCAAAAATGACCCACAGCTTAGTTTAATATCTGCTATGATAAAAAATCTGAAGGAGCAAGGAGTTACTTTCCCAGCTATTGGTTCACAG
Seq C2 exon
GCTGCTGAGCAGGCAAAAGCAAGTCCAGCCCTCGTTGCCAAAGATCCTGGTGCAGTAGCTAACAAGAAAGAAGAAGAAGATTTAGCTAAAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000008654-'4-8,'4-7,5-8=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.020 C2=0.355
Domain overlap (PFAM):
C1:
PF0079014=VHS=FE(25.8=100)
A:
PF0079014=VHS=PD(32.5=79.6)
C2:
PF0280915=UIM=PU(50.0=29.0)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AGGAGCATGTGTATCAAACTGTGG
R:
AGCTAAATCTTCTTCTTCTTTCTTGT
Band lengths:
178-325
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]