GgaEX6019220 @ galGal3
Exon Skipping
Gene
ENSGALG00000010910 | RAPGEF5
Description
NA
Coordinates
chr2:30745747-30766957:-
Coord C1 exon
chr2:30766891-30766957
Coord A exon
chr2:30760624-30760672
Coord C2 exon
chr2:30745747-30745823
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCCTGGTATTTTAGGTT
3' ss Score
9.49
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCCTGATCAAAAAATAGAAGATACAGCAGAAACCAATGCTGAAATTCTTGCCCGTCTCACTTCTGCG
Seq A exon
GTTCAGAGAGAGCTGGCTGCTGTCATTGCCTTGAAAGCCAGGAAGTCAG
Seq C2 exon
CAATTCATCAAAATGAAGAAAACAGCAGTCAAGAAATAAGAGGGCTGGAAGAGCTCAAGACTGCCTCTGATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010910-'4-7,'4-4,6-7=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Human
(hg19)
No conservation detected
Mouse
(mm9)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATAGAAGATACAGCAGAAACCAA
R:
TGAGCATCAGAGGCAGTCTTG
Band lengths:
133-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]