GgaEX6019220 @ galGal4
Exon Skipping
Gene
ENSGALG00000010910 | RAPGEF5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:HGNC:16862]
Coordinates
chr2:30848028-30869238:-
Coord C1 exon
chr2:30869172-30869238
Coord A exon
chr2:30862905-30862953
Coord C2 exon
chr2:30848028-30848104
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTCCTTTCCTGGTATTTTAGGTT
3' ss Score
9.49
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
GCCTGATCAAAAAATAGAAGATACAGCAGAAACCAATGCTGAAATTCTTGCCCGTCTCACTTCTGCG
Seq A exon
GTTCAGAGAGAGCTGGCTGCTGTCATTGCCTTGAAAGCCAGGAAGTCAG
Seq C2 exon
CAATTCATCAAAATGAAGAAAACAGCAGTCAAGAAATAAGAGGGCTGGAAGAGCTCAAGACTGCCTCTGATGCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000010910-'12-19,'12-15,14-19=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.076 A=0.000 C2=0.538
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AAAATAGAAGATACAGCAGAAACCAA
R:
TGAGCATCAGAGGCAGTCTTG
Band lengths:
133-182
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]