MmuEX0038807 @ mm9
Exon Skipping
Gene
ENSMUSG00000041992 | Rapgef5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:MGI Symbol;Acc:MGI:2444365]
Coordinates
chr12:118833714-118885590:+
Coord C1 exon
chr12:118833714-118833780
Coord A exon
chr12:118851854-118851902
Coord C2 exon
chr12:118885517-118885590
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTAATATTTTCTTAGGTG
3' ss Score
8.78
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTCTCACCAGAAAACGGAAGACTCGGAGGAAAGCAGTGATGAGATTCTTGCTCGGCTAACATCTGCG
Seq A exon
GTGCAGAGAGAGCTGGCGGCTGTTATTGCTTTGAAAGCAAGAAAGTCTG
Seq C2 exon
CAATTGAGCAAGATGATGAAAACGCTGACAAGCATGTAACCGTGACGGAGGCTAACAACGGTCCCGATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041992-'9-11,'9-10,10-11
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.000 C2=0.840
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal3)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAAAACGGAAGACTCGG
R:
TGAGGATCGGGACCGTTGTTA
Band lengths:
135-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: