RnoEX0074057 @ rn6
Exon Skipping
Gene
ENSRNOG00000005271 | Rapgef5
Description
Rap guanine nucleotide exchange factor 5 [Source:RGD Symbol;Acc:1561668]
Coordinates
chr6:145451740-145503200:+
Coord C1 exon
chr6:145451740-145451840
Coord A exon
chr6:145470648-145470696
Coord C2 exon
chr6:145503100-145503200
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTAATATTTTCTTAGGTG
3' ss Score
8.78
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
CATTTGTATGTTTTGTTTTTTTTTTTTTTTAAAGTTCTCACCAGAAAGCGGAAGACTCGGAAGAAAGCAGCGATGAAATCCTTGCTCGACTGACATCTGCG
Seq A exon
GTGCAGAGGGAGCTAGCGGCTGTTATTGCTTTGAAAGCAAGGAAGTCTG
Seq C2 exon
CAATCGAACAAGATGATGAAAACACTGACAAACACGTAACCGTGACAGAGGCTAATGACGACGCCCCGGATCCTCAGGTACGAAGGCTTCTGTCACAGTGT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000005271-'2-5,'2-4,3-5
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACTCGGAAGAAAGCAGCGATG
R:
AGCCTTCGTACCTGAGGATCC
Band lengths:
135-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]