BtaEX0029698 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000015539 | RAPGEF5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:HGNC Symbol;Acc:HGNC:16862]
Coordinates
chr4:31129533-31196118:-
Coord C1 exon
chr4:31196052-31196118
Coord A exon
chr4:31170317-31170365
Coord C2 exon
chr4:31129533-31129606
Length
49 bp
Sequences
Splice sites
3' ss Seq
TCCCCCTAATATTTTCTTAGGTG
3' ss Score
8.06
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
ATCTCATCAGAAAATTGAAGACTCAGAAGAGAGCAGTGATGAAATTCTTGCCCGTCTAACGTCTGCG
Seq A exon
GTGCAGAGAGAGCTAGCAGCTGTTATTGCTTTGAAAGCAAGGAAGTCTG
Seq C2 exon
CACTTGCACAAGATGAAGAAAACAGTGACAAACACGTGACTGTGACAGAGGCTGAAGCTGCTGCAGATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000015539-'6-15,'6-12,7-15
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.760
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GAAAATTGAAGACTCAGAAGAGAGCA
R:
CTGAGGATCTGCAGCAGCTTC
Band lengths:
132-181
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development