MmuEX0038807 @ mm10
Exon Skipping
Gene
ENSMUSG00000041992 | Rapgef5
Description
Rap guanine nucleotide exchange factor (GEF) 5 [Source:MGI Symbol;Acc:MGI:2444365]
Coordinates
chr12:117595241-117647117:+
Coord C1 exon
chr12:117595241-117595307
Coord A exon
chr12:117613381-117613429
Coord C2 exon
chr12:117647044-117647117
Length
49 bp
Sequences
Splice sites
3' ss Seq
TTTCCCTAATATTTTCTTAGGTG
3' ss Score
8.78
5' ss Seq
CTGGTGAGT
5' ss Score
10.1
Exon sequences
Seq C1 exon
GTCTCACCAGAAAACGGAAGACTCGGAGGAAAGCAGTGATGAGATTCTTGCTCGGCTAACATCTGCG
Seq A exon
GTGCAGAGAGAGCTGGCGGCTGTTATTGCTTTGAAAGCAAGAAAGTCTG
Seq C2 exon
CAATTGAGCAAGATGATGAAAACGCTGACAAGCATGTAACCGTGACGGAGGCTAACAACGGTCCCGATCCTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000041992_MULTIEX1-1/2=C1-2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.217 A=0.000 C2=0.840
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
ACCAGAAAACGGAAGACTCGG
R:
TGAGGATCGGGACCGTTGTTA
Band lengths:
135-184
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types