GgaEX6019353 @ galGal3
Exon Skipping
Gene
ENSGALG00000011262 | KCNH8
Description
NA
Coordinates
chr2:35637811-35642494:+
Coord C1 exon
chr2:35637811-35637849
Coord A exon
chr2:35639695-35640047
Coord C2 exon
chr2:35642388-35642494
Length
353 bp
Sequences
Splice sites
3' ss Seq
GTACTTATCTGCTCTTTTAGACC
3' ss Score
8.24
5' ss Seq
AAGGTAATG
5' ss Score
8.99
Exon sequences
Seq C1 exon
GTAATATCGAAATTGTCAAACAAGTCTACATTATCTCAG
Seq A exon
ACCGAGCTCAAGGGAAATGGAAACATAAAGAAGAAACTTCCTTCAATTGTGGAAGATGAGGAAGATGATGAGGAAGGAGAAGAAGAGAGCAGCACACTTTCACCAATCCATACAAGAAGTACAACTTTCCCTCAGCAGAAGGCTGGAAGCAATAAAAGCCACCTGGGGAGAAACTTGAAACAGTTGGCCTCAGGAACAGTGCCCTTCCATTCACCAATTCGTGCTTGCAGTTCAAACTCCTCAAGAACCAAACATGAAACGGAGCTCCATTACTACTCTAGAAGGAGGGAGAAAAATCTTAAATTACACCTTTCAGCACTGAACTCTGGGGGTCCACCTGACTTGAGCCCAAG
Seq C2 exon
AATTGTTGATGGGACTGAAGATGGAAATCATACTGAGGAAAGTCAAACCTTTGACTTCAGTTCTGATCAGCTCCGGCAGGAATCCAGAGCATCTCCAACAATTGGAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000011262-'12-13,'12-12,13-13=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.231 A=0.932 C2=0.946
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
No suggested primer sequences
R:
No suggested primer sequences
Band lengths:
Functional annotations
There are 1 annotated functions for this event
PMID: 27453045
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, coimmunoprecipitation. ELM ID: ELMI003176; ELM sequence: LPSIVE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]