MmuEX6078352 @ mm9
Exon Skipping
Gene
ENSMUSG00000073383 | Kcnh8
Description
potassium voltage-gated channel, subfamily H (eag-related), member 8 [Source:MGI Symbol;Acc:MGI:2445160]
Coordinates
chr17:53112157-53121602:-
Coord C1 exon
chr17:53121292-53121602
Coord A exon
chr17:53114749-53115104
Coord C2 exon
chr17:53112157-53112263
Length
356 bp
Sequences
Splice sites
3' ss Seq
CTGTCCTATTCACTATCTAGGCA
3' ss Score
8.45
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
CCATGGGAGACAATCAACTTGATGTTGTCTCTCATGGTGAACTTCAACTTGATATTGTATGTGTTGTAGATTTCTATGCTATGTCCTGTGATAGACTGTAGACCTTCCCTTCCTGTTATGAGTACACAATGATCAACAGAGGTACTAGAGGGTTGTGCCCTTTAGAAGTATCTTTTAGAAGACATTTTTTCTTCCCTACAAAAACACACATCTTGAAATGTGTATTCCATTGAAGAGGCTTAAAGTGTTAAACATTCTGTTTGTTCTTTCAGGTAATATCAAGATTATCGAACAAATCTACAGTCTCACAG
Seq A exon
GCAGAGCCCAAGGGGAATGGAAGCATCAACAAGAGACTCCCATCCATTGTGGAAGATGAGGAGGAAGAAGAGGTTGAGGAAGAGGAGACGACCTCCCTTTCTCCTATCTACACAAGGGGATCCTCTGTCTCACATAGCAAAAAGACTGGAAGCAATAAGACCTATCTAGGCTTGAGCTTAAAGCAACTGGCCTCAGGAACGGTACCATTCCACTCACCTATCAGAGTCTCCAGTGCCAACTCCCCTAAAACCAAGCAGGAAGCTGACCCACCTAACCATGGTAGAAAGAAAGAGAAGAACCTGAAAGTGCAGCTTTCCAGCCTGGGTAGTGCTGGAACCCCAGAGCTTAGTCCAAG
Seq C2 exon
GATTGTTGATGGAATTGAAGATGGTAACAGCAATGAGGAAACTCAGACTTTTGACTTTGGCTCTGAACAGATCAGGCCAGAGCCCAGGATTTCCCCTCCCCTTGCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000073383-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
5' UTR
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTATGTCCTGTGATAGACTGT
R:
CTGCAAGGGGAGGGGAAATC
Band lengths:
342-698
Functional annotations
There are 1 annotated functions for this event
PMID: 27453045
Encodes an experimentally validated Eukaryotic Linear Motif (ELM). Method: alanine scanning, coimmunoprecipitation. ELM ID: ELMI003176; ELM sequence: LPSIVE; Overlap: FULL
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: