GgaEX6020684 @ galGal3
Exon Skipping
Gene
ENSGALG00000013079 | F1NT47_CHICK
Description
NA
Coordinates
chr2:82376671-82396897:+
Coord C1 exon
chr2:82376671-82376780
Coord A exon
chr2:82387062-82387212
Coord C2 exon
chr2:82396763-82396897
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCTTTTTTTTCCTTTAACAGCTC
3' ss Score
10.44
5' ss Seq
AAGGTAATT
5' ss Score
8.83
Exon sequences
Seq C1 exon
TGTTTTGGACTCCTGGGAACAAATGGAGCTGGGAAAAGCACAACGTTTAAGATGCTGACTGGAGATATCGTTCCATCTGCAGGGCGTGCTGTTATCCGAACTCCAACAGG
Seq A exon
CTCTGAAATGGATATACTGTCTGCTAGCTCTGAAGGCATTCTTATTGGCTACTGTCCACAGCAAGATGCACTGGATGAACTTCTAACGGGTTGGGAGCATCTTTATTATTACTGCACACTGCGTGGAATTCCAAAACAAAATATTTGTAAG
Seq C2 exon
GTAGCAGAGGACCTTGTTAACCGGTTGCAACTCAATGCCCATGCTGACAAACTGGTGAGAACATACAGTGCTGGCACAAAAAGAAAGCTCTCTGCTGCTCTGGCTCTAGTTGGTAAACCACAAATACTTTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013079-'41-42,'41-41,42-42=AN
Average complexity
A_C1
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(24.2=100)
A:
PF0000522=ABC_tran=FE(33.6=100)
C2:
PF0000522=ABC_tran=FE(29.5=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTTTTGGACTCCTGGGAACA
R:
GGTTTACCAACTAGAGCCAGAGC
Band lengths:
229-380
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]