HsaEX6008191 @ hg19
Exon Skipping
Gene
ENSG00000179869 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:14638]
Coordinates
chr7:48567832-48626884:+
Coord C1 exon
chr7:48567832-48567941
Coord A exon
chr7:48619820-48619970
Coord C2 exon
chr7:48626750-48626884
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGTGCTGCTTCTCTCTGCAGAGA
3' ss Score
11.83
5' ss Seq
GAGGTAAAT
5' ss Score
8.39
Exon sequences
Seq C1 exon
TGCTTTGGACTTCTAGGGGTGAATGGAGCTGGGAAGAGCACGACTTTCAAAATGCTGAATGGTGAAGTTTCTCTAACTTCAGGACATGCTATCATCAGGACTCCCATGGG
Seq A exon
AGACGCCGTGGACCTGTCTTCTGCTGGCACGGCAGGCGTGCTCATTGGCTACTGTCCCCAGCAGGATGCCCTGGACGAGCTTCTGACTGGTTGGGAACATCTCTATTATTACTGTAGCTTACGCGGGATTCCAAGGCAGTGCATCCCTGAG
Seq C2 exon
GTTGCTGGAGACCTCATCAGGCGCTTACACCTCGAAGCCCACGCGGACAAACCTGTGGCCACCTACAGTGGGGGAACCAAGCGGAAACTCTCTACAGCCCTGGCCCTGGTGGGGAAACCTGACATTCTTTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179869-'60-58,'60-57,61-58=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(24.2=100)
A:
PF0000522=ABC_tran=FE(33.6=100)
C2:
PF0000522=ABC_tran=FE(29.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTGGACTTCTAGGGGTGA
R:
TAAAAGAATGTCAGGTTTCCCCACC
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)