RnoEX0004762 @ rn6
Exon Skipping
Gene
ENSRNOG00000025645 | Abca13
Description
ATP binding cassette subfamily A member 13 [Source:RGD Symbol;Acc:1305895]
Coordinates
chr14:89771000-89806485:+
Coord C1 exon
chr14:89771000-89771109
Coord A exon
chr14:89799422-89799572
Coord C2 exon
chr14:89806351-89806485
Length
151 bp
Sequences
Splice sites
3' ss Seq
TATTCTATTTGTGTACACAGAGA
3' ss Score
6.59
5' ss Seq
GAGGTTAGC
5' ss Score
3.77
Exon sequences
Seq C1 exon
TGCTTCGGGCTCCTTGGGGTGAATGGTGCTGGGAAGAGCACAACATTCAAAATTCTGAATGGCGAAACTCCACCAAGTTCAGGCTATGCCACGATCAGGACTCCTCAGGG
Seq A exon
AGATATGGTGGATCTGGCTTCTGCTGGCAAAGTGGGCGTGCTTATTGGCTACTGTCCACAGCAGGATGCCCTGGATGAGCTCCTGACTGGCTGGGAACATCTTCAATACTACTGCAGACTCCGTGGTATTCCAAAGCAGAACATTCCAGAG
Seq C2 exon
GTGGCTGCAGATCTGGTGAGGCGCCTGCACCTTGAACTTCATGTGGATAAACCTGTGGCCACTTACAGTGGAGGCACTAGAAGGAAGCTCTCCACAGCCCTGGCCCTAGTGGGCAAGCCTGATATTCTTTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025645_CASSETTE2
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
NA
No structure available
Features
Disorder rate (Iupred):
C1=NA A=NA C2=NA
Domain overlap (PFAM):
C1:
NA
A:
NA
C2:
NA
Main Inclusion Isoform:
NA
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTCGGGCTCCTTGGG
R:
TAAAAGAATATCAGGCTTGCCCACT
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]