MmuEX6084001 @ mm10
Exon Skipping
Gene
ENSMUSG00000004668 | Abca13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:MGI Symbol;Acc:MGI:2388707]
Coordinates
chr11:9588388-9622005:+
Coord C1 exon
chr11:9588388-9588497
Coord A exon
chr11:9615657-9615807
Coord C2 exon
chr11:9621871-9622005
Length
151 bp
Sequences
Splice sites
3' ss Seq
TGTTCTCTTTGTGTATGCAGAGA
3' ss Score
8.07
5' ss Seq
GAGGTAAGC
5' ss Score
9.85
Exon sequences
Seq C1 exon
TGCTTTGGGCTCCTTGGAGTTAATGGTGCTGGGAAGAGCACAACATTTAAAATTCTGAACGGCGAAACTCCCCCAAGTTCAGGATACACCGTCATCAGGACTCCTCAAGG
Seq A exon
AGATATGGTGGATCTGGCTTCTGCTGGCAAAGCAGGCATTCTGATTGGCTACTGTCCACAGCAGGACGCCCTGGATGAGCTTCTGACTGGCTGGGAACATCTTCAATACTACTGTAGACTCCGTGGAATTCCAAAGCAGTACATCCCAGAG
Seq C2 exon
GTTGCTGCAGACCTGGTGCGACGCTTGCACCTTGAGTCTCATGTGGACAAACCTGTAGCCACTTACAGTGGGGGCACCAGACGGAAGCTCTCCACAGCCCTGGCCCTGGTGGGAAAGCCTGATATTCTTTTATTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004668-'77-76,'77-75,81-76
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.243 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=PD(72.3=91.9)
A:
PF0000522=ABC_tran=FE(33.6=100)
C2:
PF0000522=ABC_tran=FE(29.5=100)
Main Skipping Isoform:
ENSMUST00000042740fB5129
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGCTTTGGGCTCCTTGGAGTT
R:
TAAAAGAATATCAGGCTTTCCCACCA
Band lengths:
242-393
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types