BtaEX0001685 @ bosTau6
Exon Skipping
Gene
ENSBTAG00000003531 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr4:7133948-7194856:-
Coord C1 exon
chr4:7194747-7194856
Coord A exon
chr4:7140139-7140289
Coord C2 exon
chr4:7133948-7134082
Length
151 bp
Sequences
Splice sites
3' ss Seq
GCTGCTTCTTCTCTTGGCAGAGA
3' ss Score
8.2
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TGCTTTGGGCTTCTCGGGGTGAACGGGGCTGGGAAAACCACCACTTTCAAAATGCTGACTGGGGACCTGCCTCCAAGCTCGGGACACGCCGTCGTCAGGACTCCCACAGG
Seq A exon
AGAGGATGTGAATCTGTCTCTTGCTGGTGCAGCCGGCATCCGCATTGGCTACTGTCCGCAGCAGGATGCCCTGGACGAGCTCCTGACGGGCTGGGAGCACCTGCACTACTACTGCTGCCTCCATGGGATTCCAAAGCAGTCTATCCCCAAG
Seq C2 exon
GTGGCTGGAGACCTCGTGAGACGCCTCCACCTAGAAGCCCACGTGGACAAACCCGTGGCCACCTACAGTGGGGGCACCAAGAGGAAGCTGTCCACAGCCCTGGCCCTGCTGGGGAAACCTGACCTTCTCTTACTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSBTAG00000003531-'67-66,'67-65,68-66
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.270 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF0000522=ABC_tran=FE(24.2=100)
A:
PF0000522=ABC_tran=FE(33.6=100)
C2:
PF0000522=ABC_tran=FE(29.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Chicken
(galGal4)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTTTGGGCTTCTCGGGGTGAA
R:
CAGTAAGAGAAGGTCAGGTTTCCC
Band lengths:
243-394
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development