GgaEX6020705 @ galGal3
Exon Skipping
Gene
ENSGALG00000013079 | F1NT47_CHICK
Description
NA
Coordinates
chr2:82304282-82308842:+
Coord C1 exon
chr2:82304282-82304611
Coord A exon
chr2:82306963-82307032
Coord C2 exon
chr2:82308708-82308842
Length
70 bp
Sequences
Splice sites
3' ss Seq
TTTCTCCTCTGGTGTTGTAGTGT
3' ss Score
7.88
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
TATATGAAGACAATGGGCGTACATCCAGCCATTCACTTCTTTGCTTGGTTTCTAGAGAATGTAATTGTGCTCACAATAAGCAGCTGTGCACTGGCTGTCATTTTAAAAGCAAGTGGTATCTTTACTTATAGCAATGGTTTCCTCATCTTCCTTTTTCTCCTGGATTTTGGAGTGACAGTTATTATGTTAAGCTATTTTTTGGGAGTTTTTTTTAGCAGTGCCAATACTGCAGCTCTGTGTGCCAGCCTTGTGTATATGATCAGTTTTTTACCCTACATAGTTTTGTTGGTCTTGCAGAACCAGTTGAGTTTTACCAAGCAGATTATAATG
Seq A exon
TGTCTTCTCTCTACAACGGCCTTTGGGCAAGGAGTGTTTTTCATTACATTCTTTGAGGGCCAAGAAATAG
Seq C2 exon
GAATTCAGTGGAATAACATGTACCAGCCAATGGTGCAAGGAGGATACATGACCTTTGGATGTACCTGCTGGATGATGTTCTTCGACTCCATTTTGTATTCTATAGGTGGCTGGTATTTCAGCAATATTATTCTAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013079-'16-17,'16-16,17-17=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(29.6=100)
A:
PF126982=ABC2_membrane_3=FE(6.2=100)
C2:
PF126982=ABC2_membrane_3=PD(10.3=82.6)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
AATACTGCAGCTCTGTGTGCC
R:
CCAGCAGGTACATCCAAAGGT
Band lengths:
179-249
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]