MmuEX6084022 @ mm10
Exon Skipping
Gene
ENSMUSG00000004668 | Abca13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:MGI Symbol;Acc:MGI:2388707]
Coordinates
chr11:9399135-9403918:+
Coord C1 exon
chr11:9399135-9399464
Coord A exon
chr11:9402146-9402215
Coord C2 exon
chr11:9403787-9403918
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCCTCCATCAATCATGGCAGTGC
3' ss Score
5.23
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TACATGCGGATGATGGGACTGCATCCAACCATCCACTTCCTGTCCTGGTTCCTGGAGAACATGGCCACTCTGGCTCTGAGCAGTGCTGCTCTTGCTGTCATTCTGAAGATGAGTGGCATCTTCATGCACAGTGATGCCTTCATCATTTTTCTTTACTTGCTGGATTTTGGGGTGTCAGCTGTCATGATGAGCTACTTCCTAAGTGTGTTTTTCAACCAAGCTAATACAGCAGCCCTGTGTACCAGCCTGGGGTACATGATCAGTTTCCTGCCCTATGTGGTCCTGTTGGTCCTACATAACCAACTCAGTTTCGCTATTCAGACTCTTCTG
Seq A exon
TGCTTGCTTTCAACCACAGCCTTTGGACAAGGAGTCTTTTTCATCACATTTCTGGAAGGACAGGAGGAAG
Seq C2 exon
GGATCCAGTGGGGTAACATGTACCGCGCTCCAGAGCCAGGGGGCATGACATTTGGCTGGGTGTGCTGGATGATTCTGTTTGATGCAATCCTTTATTTTTTGGGTGGATGGTACTTCAGCAACTTGGTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000004668-'40-43,'40-39,47-43=AN
Average complexity
A_S
Mappability confidence:
NA
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(23.9=100)
A:
PF126982=ABC2_membrane_3=FE(5.0=100)
C2:
PF126982=ABC2_membrane_3=PD(8.1=82.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGTGGTCCTGTTGGTCCTACA
R:
TGCTGAAGTACCATCCACCCA
Band lengths:
175-245
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Ribosome-engaged transcriptomes of neuronal types
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types