GgaEX6020705 @ galGal4
Exon Skipping
Gene
ENSGALG00000013079 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:HGNC:14638]
Coordinates
chr2:79983254-79987167:+
Coord C1 exon
chr2:79983254-79983306
Coord A exon
chr2:79985316-79985371
Coord C2 exon
chr2:79987047-79987167
Length
56 bp
Sequences
Splice sites
3' ss Seq
TTGTAGTGTCTTCTCTCTACAAC
3' ss Score
-0.18
5' ss Seq
TAGGTAAGC
5' ss Score
8.89
Exon sequences
Seq C1 exon
CTTAGTTCTACAATGGTTTTATATGAGCAGTGTATCTTAAAAAGTATGTCCAA
Seq A exon
AACGGCCTTTGGGCAAGGAGTGTTTTTCATTACATTCTTTGAGGGCCAAGAAATAG
Seq C2 exon
GAATTCAGTGGAATAACATGTACCAGCCAATGGTGCAAGGAGGATACATGACCTTTGGATGTACCTGCTGGATGATGTTCTTCGACTCCATTTTGTATTCTATAGGTGGCTGGTATTTCAG
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000013079-'3-4,'3-3,4-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(6.2=100)
A:
PF126982=ABC2_membrane_3=FE(7.0=100)
C2:
PF126982=ABC2_membrane_3=PD(14.0=92.7)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Rat
(rn6)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TCTACAATGGTTTTATATGAGCAGTG
R:
TCGAAGAACATCATCCAGCAGG
Band lengths:
132-188
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]