HsaEX6008212 @ hg19
Exon Skipping
Gene
ENSG00000179869 | ABCA13
Description
ATP-binding cassette, sub-family A (ABC1), member 13 [Source:HGNC Symbol;Acc:14638]
Coordinates
chr7:48411765-48416169:+
Coord C1 exon
chr7:48411765-48412094
Coord A exon
chr7:48413944-48414013
Coord C2 exon
chr7:48416038-48416169
Length
70 bp
Sequences
Splice sites
3' ss Seq
CTCCATCAATCTGTGGGCAGTGC
3' ss Score
5.14
5' ss Seq
CAGGTAAGA
5' ss Score
10.77
Exon sequences
Seq C1 exon
TATATGCGGATGATGGGAGTGCATCCAGTGATCCATTTCCTGGCCTGGTTCCTGGAGAACATGGCTGTGTTGACCATAAGCAGTGCTACTCTGGCCATCGTTCTGAAAACAAGTGGCATCTTTGCACACAGCAATACCTTTATTGTTTTCCTCTTTCTCTTGGATTTTGGGATGTCAGTCGTCATGCTGAGCTACCTCTTGAGTGCATTTTTCAGCCAAGCTAATACAGCGGCCCTTTGTACCAGCCTGGTGTACATGATCAGCTTTCTGCCCTACATAGTTCTATTGGTTCTACATAACCAATTAAGTTTTGTTAATCAGACATTTCTG
Seq A exon
TGCCTTCTTTCGACAACCGCCTTTGGACAAGGGGTATTTTTTATTACATTCCTGGAAGGACAAGAGACAG
Seq C2 exon
GGATTCAATGGAATAATATGTACCAGGCTCTGGAACAAGGGGGCATGACATTTGGCTGGGTTTGCTGGATGATTCTTTTTGATTCAAGCCTTTATTTTTTGTGTGGATGGTACTTGAGCAACTTGATTCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSG00000179869-'35-34,'35-33,36-34=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(23.2=100)
A:
PF126982=ABC2_membrane_3=FE(4.9=100)
C2:
PF126982=ABC2_membrane_3=PD(7.9=82.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GCTAATACAGCGGCCCTTTGT
R:
AGCAAACCCAGCCAAATGTCA
Band lengths:
177-247
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Autistic and control brains
Other AS DBs:
FasterDB (Includes CLIP-seq data)
AS-ALPS (AS-induced ALteration of Protein Structure, links to PINs)
APPRIS (Selection of principal isoform)
DEU primates (Only for human)