RnoEX6043342 @ rn6
Exon Skipping
Gene
ENSRNOG00000025645 | Abca13
Description
ATP binding cassette subfamily A member 13 [Source:RGD Symbol;Acc:1305895]
Coordinates
chr14:89572595-89577275:+
Coord C1 exon
chr14:89572595-89572924
Coord A exon
chr14:89575528-89575597
Coord C2 exon
chr14:89577144-89577275
Length
70 bp
Sequences
Splice sites
3' ss Seq
CCCTCCATCCACCCCGGCAGTGC
3' ss Score
6.25
5' ss Seq
AAGGTAAGA
5' ss Score
10.57
Exon sequences
Seq C1 exon
TACATGCGAATAATGGGGCTGCATCCGGTCATCCACTTCCTGTCCTGGTTCCTGGAGAACATGGCCACCCTGGCTCTGAGCAGTGCTGCCCTCGCTCTCATTCTGAAGATGAGTGGCATCTTCATGCACAGTGATGCCTTTATCATTTTCCTTTACTTGCTGAATTTTGGGGTGTCAGCTGTCATGCTGAGCTACTTCCTAAGTGTGTTTTTCAACAAAGCTAATACAGCAGCCCTGTGTACCAGCCTGGGGTACATGATCAGCTTCCTGCCCTATGTGGTCTTGTTGGTCCTACATAACCAACTCAGTTTTGCTCTTCAGACCCTTCTG
Seq A exon
TGCTTACTTTCAACCACAGCCTTCGGACAAGGAGTCTTTTTCATTACATTTCTGGAAGGACAGGAAGAAG
Seq C2 exon
GGATCCAGTGGGGTAACATGTACCGAGCTCCAGAGCCAGGGGGCATGACATTTGGCTGGGTCTGCTGGATGATTCTGTTTGATTCAATCCTTTATTTTTTGGGTGGATGGTATTTCAGCAACTTGGTCCCTG
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000025645-'38-36,'38-35,39-36=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
ORF disruption upon sequence exclusion
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.000 C2=0.000
Domain overlap (PFAM):
C1:
PF126982=ABC2_membrane_3=FE(28.8=100)
A:
PF126982=ABC2_membrane_3=FE(6.1=100)
C2:
PF126982=ABC2_membrane_3=PD(9.8=82.2)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Human
(hg38)
No conservation detected
Mouse
(mm10)
No conservation detected
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
CTGTGTACCAGCCTGGGGTA
R:
GAATCATCCAGCAGACCCAGC
Band lengths:
171-241
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]