GgaEX6022029 @ galGal4
Exon Skipping
Gene
ENSGALG00000016037 | SPAG1
Description
sperm associated antigen 1 [Source:HGNC Symbol;Acc:HGNC:11212]
Coordinates
chr2:128175586-128180211:+
Coord C1 exon
chr2:128175586-128175745
Coord A exon
chr2:128177421-128177546
Coord C2 exon
chr2:128180144-128180211
Length
126 bp
Sequences
Splice sites
3' ss Seq
AGATTCTTACTTATTTTCAGAGC
3' ss Score
6.79
5' ss Seq
CAGGTATCT
5' ss Score
7.33
Exon sequences
Seq C1 exon
GTCTGGTGAAGAGGGATGTTATCCTGACCTGACATTATTTTGTGAAAAGCGTATTGAGCATTTAGCTCCAGGGAGCAGAGTTCTCAGAAAAGATAAGCCTGCAGCCACAGCAGCTGATTTTACAGCTGAAGAATGGGAAACAATTAATGGTGAACTGATG
Seq A exon
AGCTGGGTGGCAGAAATGAATGAAGATGATAATAAACCAGAGTTTTTGAAAACAGGCACACTGCATGAAGGACAAGATAACTTGCCTCCTATTCGTTGTTCCAGCAGCTGTCTTCCTGCTTTCCAG
Seq C2 exon
AATGAAAAGTTCCAAAACAAACAAAGAAATAAGAAAAACATACCACGGGATTACAGTGAATGGGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000016037-'1-4,'1-1,3-4=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.074 A=0.333 C2=0.391
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTCTGGTGAAGAGGGATGTTATC
R:
ATCCCATTCACTGTAATCCCGTG
Band lengths:
226-352
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]