MmuEX0044489 @ mm9
Exon Skipping
Gene
ENSMUSG00000037617 | Spag1
Description
sperm associated antigen 1 [Source:MGI Symbol;Acc:MGI:1349387]
Coordinates
chr15:36113412-36120291:+
Coord C1 exon
chr15:36113412-36113571
Coord A exon
chr15:36116362-36116487
Coord C2 exon
chr15:36120227-36120291
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTCCATCCTTCTTAGAGT
3' ss Score
8.26
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTCTGGTGAAGAAGGCTACTATCCTGAACTCACGGAATTTTGCGAGAAGTGCCTCACCAACTTGGCTCCTAAAAGTCGAGCTCTGAGGAAGGACAAGCCTGCAGAGACAGCATCCAGCTTTTCAGCGGAAGAGTGGGAAAAAATCGACAGTGATCTAAAG
Seq A exon
AGTTGGGTGTCAGAAATCAAAAGAGAGGAAAATACATGTCACTTCCATGACCCTGAAAACCATCCCGGAGTGGAAGATCCTCTGCCTCCTGTCCGCGGCTCCACCTGCTGCCCTCACAGTGGCAAG
Seq C2 exon
GAAACATATTCTAAAAGTAAGACAGCTAAGAAGAGGATTCCAAGGGATTATGCAGAATGGGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000037617-'4-3,'4-2,5-3
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.111 A=0.571 C2=0.182
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAAGAAGGCTACTATCCTGA
R:
CCCATTCTGCATAATCCCTTGGA
Band lengths:
218-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
SPECIAL DATASETS
- Pre-implantation embryo development
- Neural differentiation time course
- Muscular differentiation time course
- Spermatogenesis cell types
- Reprogramming of fibroblasts to iPSCs
- Hematopoietic precursors and cell types
Other AS DBs: