RnoEX0084994 @ rn6
Exon Skipping
Gene
ENSRNOG00000010078 | Spag1
Description
sperm associated antigen 1 [Source:RGD Symbol;Acc:1310702]
Coordinates
chr7:74999854-75007268:+
Coord C1 exon
chr7:74999854-75000013
Coord A exon
chr7:75002477-75002602
Coord C2 exon
chr7:75007204-75007268
Length
126 bp
Sequences
Splice sites
3' ss Seq
TTCTGCTCCATCCTTCTCAGAGT
3' ss Score
8.5
5' ss Seq
AAGGTAGGC
5' ss Score
10.08
Exon sequences
Seq C1 exon
GTCTGGTGAAGAAGGCTATTATCCTGAACTCACGGAGTTTTGTGAGAAGCGCCTCACCGGCTTGGCTCCCAGAAGTCGAGCTCTGAGGAAGGACAAGCCTGCAGCCACAGCCTCCAGCTTTTCAGCAGAAGAGTGGGAAAAAATCGACAGCGATCTAAAG
Seq A exon
AGTTGGGTGTCAGAAATCAAAAGAGAGGAAAACACACGACACTTCCATGACCCTGAAAAACATCCAGGAGTGGAAGATCCTCTGCCTCCTGTTCGTGGCTCCAACAGCTGTCCTCGCGGCGGCAAG
Seq C2 exon
GAAACATCTTCTAAAAGTAAGACAGCTAAGAAGAGGATTCCAAGGGATTATGCAGAGTGGGATAA
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000010078-'7-4,'7-3,8-4
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.185 A=0.786 C2=0.545
Domain overlap (PFAM):
C1:
NO
A:
NO
C2:
NO
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Zebrafish
(danRer10)
No conservation detected
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
TGGTGAAGAAGGCTATTATCCTGA
R:
CCCACTCTGCATAATCCCTTGG
Band lengths:
218-344
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]