GgaEX6023028 @ galGal3
Exon Skipping
Gene
ENSGALG00000005321 | LAMA5
Description
NA
Coordinates
chr20:7858918-7890864:-
Coord C1 exon
chr20:7890823-7890864
Coord A exon
chr20:7884870-7885022
Coord C2 exon
chr20:7858918-7859035
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTGGTGTCCTTTCCCCCAGGGC
3' ss Score
11.3
5' ss Seq
CAGGTAACC
5' ss Score
8.66
Exon sequences
Seq C1 exon
GGGGGGCCGCTGGCGGGGGGGGACCCCAACCAGACCATCCAG
Seq A exon
GGCCAGTACTGTGACATCTGCTCCTCAGCAAACAGCAACAAGGCACATCCCATAACGAACGCCATCGATGGGACGGAGCGCTGGTGGCAGAGCCCCCCGCTGTCCCGTGGGCTGGAGTTCAACCAGGTCAACGTCACTCTGGACCTTGGACAG
Seq C2 exon
CTCTTCCACGTGGCGTATGTCCTGATCAAATTTGCAAATTCCCCTCGTCCTGACCTCTGGGTGCTGGAACGATCTACTGACTTTGGCCTCACCTATGAGCCCTGGCAGTACTTTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000005321-'1-3,'1-1,2-3=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.000 A=0.147 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=FE(12.0=100)
A:
PF0005512=Laminin_N=FE(19.7=100)
C2:
PF0005512=Laminin_N=FE(15.4=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Fruitfly
(dm6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GGGACCCCAACCAGACCATC
R:
CAAAGTACTGCCAGGGCTCAT
Band lengths:
138-291
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]