RnoEX6020586 @ rn6
Exon Skipping
Gene
ENSRNOG00000053691 | Lama5
Description
laminin subunit alpha 5 [Source:RGD Symbol;Acc:621023]
Coordinates
chr3:175585869-175601127:-
Coord C1 exon
chr3:175600804-175601127
Coord A exon
chr3:175596709-175596861
Coord C2 exon
chr3:175585869-175585986
Length
153 bp
Sequences
Splice sites
3' ss Seq
TGGCCATCTTCTCCCTGCAGGGC
3' ss Score
11.38
5' ss Seq
CAGGTAGGG
5' ss Score
9.46
Exon sequences
Seq C1 exon
GCCCCCAGGAGGAAAATGGCGAAGCGCGGAGGGCAGCTCTGCGTGGGGTGCGCACCGGGAGCTCGTGGCCCCCGGAGCCTCGCGCCGCTGCCCTTGCTGCTGCTGGCTGGGCTGGCGCTGGTAGGCGAGGCGCGCATTCCCGGGGGCGATGGCTTCAGCCTGCACCCGCCCTACTTCAACCTGGCGGAGGGCGCTCGCATCACCGCGTCCGCGACCTGCGGCGAGGAGGCCCCGACGCGCAGTGCCTCACGCCCCACCGAGGACCTCTACTGCAAGCTGGTTGGGGGTCCGGTGGCGGGCGGAGATCCCAACCAGACAATCCAG
Seq A exon
GGCCAGTACTGTGACATCTGTATAGCTGCCAACAGCAACAAGGCACACCCTGTGAGCAACGCCATCGATGGCACGGAGCGCTGGTGGCAGAGCCCACCCCTGTCCCGTGGCCCGGAGTACAATGAGGTCAACGTCACACTGGACCTGGGCCAG
Seq C2 exon
GTGTTCCACGTGGCCTATGTGCTCATCAAGTTTGCTAACTCACCTCGGCCTGACCTCTGGGTACTGGAACGGTCCACAGACTTCGGCCACACTTACCAGCCATGGCAGTTCTTTGCCT
VastDB Features
Vast-tools module Information
Secondary ID
ENSRNOG00000053691-'0-1,'0-0,5-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.078 A=0.118 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(21.3=52.4)
A:
PF0005512=Laminin_N=FE(19.7=100)
C2:
PF0005512=Laminin_N=FE(15.4=100)
Main Skipping Isoform:
NA
Other Inclusion Isoforms:
NA
Other Skipping Isoforms:
NA
Associated events
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
CCCTACTTCAACCTGGCGGAG
R:
GGTAAGTGTGGCCGAAGTCTG
Band lengths:
253-406
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]