Special

DmeEX0004905 @ dm6

Exon Skipping

Gene
FBgn0002526 | LanA
Description
The gene Laminin A is referred to in FlyBase by the symbol DmelLanA (CG10236, FBgn0002526). It is a protein_coding_gene from Dmel. It has 2 annotated transcripts and 2 polypeptides (1 unique). Gene sequence location is 3L:6203831..6218022. Its molecular function is described by: signaling receptor binding. It is involved in the biological process described with 14 unique terms, many of which group under: cell adhesion; biological adhesion; tissue development; developmental growth; regulation of locomotion. 32 alleles are reported. The phenotypes of these alleles manifest in: tract neuropil; imaginal tissue; abdominal 6 oblique muscle; embryonic/larval dorsal vessel; abdominal 5 ventral oblique muscle 5. The phenotypic classes of alleles include: size defective; lethal; increased mortality during development; phenotype. Summary of modENCODE Temporal Expression Profile: Temporal profile ranges from a peak of very high expression to a trough of low expression. Peak expression observed within 06-24 hour embryonic stages.
Coordinates
chr3L:6215095-6218022:-
Coord C1 exon
chr3L:6217594-6218022
Coord A exon
chr3L:6217103-6217249
Coord C2 exon
chr3L:6215095-6215719
Length
147 bp
Sequences
Splice sites
3' ss Seq
TGTTTTCTGCGTTTTTGTAGGTC
3' ss Score
11.1
5' ss Seq
CAGGTAAGC
5' ss Score
9.88
Exon sequences
Seq C1 exon
ATCAGTTGCTCGAGAAGAGCCATCCAGTGCGGTTGGATGAGCTCCACCAAAGGAATACGAAAAGAACAGTGAAAAAAGTGAAATACAGCAGATAAGAAAGTGAAATACATACATAAGTGAACCGGGAAAGAAAGAGATAGAACCGGAAGTGGTCCGTGGAGAAAGGACTGTCGTTATCGCAGCGCGGGTGCTTGAACTCTCGGCACAATGGGGCACGGAGTGGCCTCCATTGGGGCTCTGCTAGTAATCCTGGCCATCTCCTATTGCCAGGCGGAGCTAACGCCACCATATTTCAATCTGGCCACGGGCAGGAAGATTTATGCCACAGCTACGTGTGGCCAGGATACGGATGGACCAGAGCTCTACTGCAAACTAGTGGGAGCCAATACGGAACACGATCATATCGACTATTCAGTTATCCAGGGACAG
Seq A exon
GTCTGCGATTACTGCGATCCCACGGTGCCGGAGAGGAATCATCCGCCAGAGAACGCGATCGATGGCACCGAGGCCTGGTGGCAGAGTCCTCCGTTGTCCAGGGGCATGAAATTCAATGAAGTCAATTTGACCATCAACTTCGAACAG
Seq C2 exon
GAATTCCATGTGGCCTATTTGTTCATTCGCATGGGCAACTCCCCTCGTCCGGGTCTCTGGACGCTGGAGAAGTCCACGGATTATGGCAAGACCTGGACGCCTTGGCAGCACTTTTCCGATACCCCCGCCGATTGTGAGACGTACTTTGGCAAGGACACCTACAAGCCAATTACCCGCGACGACGACGTCATCTGCACCACTGAATACTCAAAGATTGTGCCGCTGGAGAACGGCGAGATTCCCGTGATGCTGCTCAATGAGCGACCCAGTTCCACCAACTACTTCAACTCAACGGTGCTGCAGGAATGGACTCGTGCCACTAACGTCAGGATTCGTCTGCTTCGCACCAAGAATCTTTTGGGACATTTGATGTCTGTGGCTCGACAAGATCCCACGGTGACGCGTCGCTACTTCTACTCGATCAAGGACATCTCGATCGGAGGAAGGTGCATGTGCAATGGACACGCCGACACCTGTGACGTCAAGGACCCGAAGAGCCC
VastDB Features
Vast-tools module Information
Secondary ID
FBgn0002526-'0-1,'0-0,1-1
Average complexity
S
Mappability confidence:
100%=100=100%
Protein Impact

Alternative protein isoforms (Ref)

No structure available
Features
Disorder rate (Iupred):
  C1=0.000 A=0.306 C2=0.000
Domain overlap (PFAM):

C1:
PF0005512=Laminin_N=PU(20.2=67.6)
A:
PF0005512=Laminin_N=FE(19.4=100)
C2:
PF0005512=Laminin_N=PD(59.3=70.3)


Main Inclusion Isoform:
FBpp0076722


Main Skipping Isoform:
NA


Other Inclusion Isoforms:
NA


Other Skipping Isoforms:
NA
Associated events
Primers PCR
Suggestions for RT-PCR validation
F:
ACGGATGGACCAGAGCTCTAC
R:
GCTTGTAGGTGTCCTTGCCAA
Band lengths:
250-397
Functional annotations
There are 0 annotated functions for this event


GENOMIC CONTEXT[edit]

INCLUSION PATTERN[edit]


SPECIAL DATASETS

  • Neural diversity
  • Neurogenesis
  • Neuronal activity
  • Splicing factor regulation (brain)
  • Splicing factor regulation (SL2)