GgaEX6021376 @ galGal3
Exon Skipping
Gene
ENSGALG00000015056 | LAMA3
Description
NA
Coordinates
chr2:106275582-106290390:+
Coord C1 exon
chr2:106275582-106275866
Coord A exon
chr2:106280624-106280776
Coord C2 exon
chr2:106290273-106290390
Length
153 bp
Sequences
Splice sites
3' ss Seq
TTTAATTTTCTGTGTTTCAGGGA
3' ss Score
11.3
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
CGCAGGATGGCTGCGGCGCCGGTTCGCTTTGCCCACGGTACCCCAGCACCGGGCTGCCGGCTCCTGTGGGCTCTGCTCCCGCCGCTCTTCTCCCTGTGCCCTGCGCAGACGGAGCCCCCCGGCTCCCTCGGACTCAGCCTCCACCCGCCGTACTTCAACCTGGCCGAGACGGCCGGCATCTCGGCGACCGCTACCTGTGGGGAGGAGGAGGGCGGCGGGCGGCCGGAGCTGTACTGCAAGCTGGTGGGGGGGCCGGCCGCAGCCCCGCTGGGGAGAGCCATACAG
Seq A exon
GGACAGTTCTGTGACTACTGCAATGCTGGTGATCCCAGTAAAGCTCACCCAATCACTAACGCCATTGATGGAACGGAGCGCTGGTGGCAAAGTCCTCCTCTTTCTAAGGGCTTAAAGTACAATGAAGTCAATGTCACTTTAGATCTGGGACAG
Seq C2 exon
CTCTTCCATGTTGCCTATATTCTTATCAAGTTTGCAAATTCCCCTCGTCCAGATCTCTGGATCTTAGAAAGATCAGTGGACTTTGGAAGAACTTACACTCCCTGGCAGTATTTTGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSGALG00000015056-'0-1,'0-0,1-1=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(19.4=50.5)
A:
PF0005512=Laminin_N=FE(20.2=100)
C2:
PF0005512=Laminin_N=FE(15.7=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Cow
(bosTau6)
No conservation detected
Primers PCR
Suggestions for RT-PCR validation
F:
GTACTTCAACCTGGCCGAGAC
R:
ACTGCCAGGGAGTGTAAGTTCT
Band lengths:
245-398
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]