MmuEX6000344 @ mm9
Exon Skipping
Gene
ENSMUSG00000024421 | Lama3
Description
laminin, alpha 3 [Source:MGI Symbol;Acc:MGI:99909]
Coordinates
chr18:12492533-12560661:+
Coord C1 exon
chr18:12492533-12492817
Coord A exon
chr18:12527961-12528113
Coord C2 exon
chr18:12560544-12560661
Length
153 bp
Sequences
Splice sites
3' ss Seq
AGGCCTTTTCTCCTCCCCAGGGC
3' ss Score
9.9
5' ss Seq
CAGGTGAGT
5' ss Score
10.67
Exon sequences
Seq C1 exon
ATGGCGGTGGCTCTGGGCAGGGCACCGCGATCCTTACCGCTGCTGCTCACTCTATTGCTGCTGCTGTTGCTGAGGATGTCGCCCAGCTGGAGCGTGGTGGGTCAGGACCATCCCATGTCCTCGCGCAGCCTGCACCCGCCCTACTTCAACCTGGCCCAGGCGGCGAGAATCTGGGCCACCGCCACCTGCGGGGAGCGGGACCCAGAGGTCTCAAGGCCCCGGCCTGAGCTTTTCTGCAAATTGGTGGGCGGCCCCGCTGCACAGGGCAGCGGCCACACCATCCAG
Seq A exon
GGCCAGTTCTGTGACTACTGCAATTCTGAGGATTCCAGGAAGGCACATCCAGCCAGCCATGCAATTGATGGATCGGAACGGTGGTGGCAAAGCCCACCTCTCTCCTCCGGCACACAGTACAATCAAGTCAACCTCACCTTGGATCTGGGTCAG
Seq C2 exon
CTCTTCCATGTGGCTTATATCTTAATCAAATTTGCAAACTCTCCCCGCCCTGATCTTTGGATCCTGGAAAGATCTGTAGACTTTGGAAGCACCTACTCACCATGGCAGTATTTTGCTC
VastDB Features
Vast-tools module Information
Secondary ID
ENSMUSG00000024421-'0-2,'0-1,1-2=AN
Average complexity
A_S
Mappability confidence:
100%=100=100%
Protein Impact
Alternative protein isoforms (Ref)
No structure available
Features
Disorder rate (Iupred):
C1=0.032 A=0.039 C2=0.000
Domain overlap (PFAM):
C1:
PF0005512=Laminin_N=PU(20.3=53.7)
A:
PF0005512=Laminin_N=FE(19.9=100)
C2:
PF0005512=Laminin_N=FE(15.5=100)
Main Skipping Isoform:
NA
Other Skipping Isoforms:
NA
Associated events
Other assemblies
Conservation
Primers PCR
Suggestions for RT-PCR validation
F:
TCAGGACCATCCCATGTCCTC
R:
AAAGATCAGGGCGGGGAGAG
Band lengths:
242-395
Functional annotations
There are 0 annotated functions for this event
GENOMIC CONTEXT[edit]
INCLUSION PATTERN[edit]
Other AS DBs: